Prion diseases are characterized by deposits of abnormal conformers of the PrP protein. Although large aggregates of proteinase K-resistant PrP (PrP res ) are infectious, the precise relationships between aggregation state and infectivity remain to be established. In this study, we have fractionated detergent lysates from prion-infected cultured cells by differential ultracentrifugation and ultrafiltration and have characterized a previously unnoticed PrP species. This abnormal form is resistant to proteinase K digestion but, in contrast to typical aggregated PrP res , remains in the soluble fraction at intermediate centrifugal forces and is not retained by filters of 300-kDa cutoff. Cell-based assay and inoculation to animals demonstrate that these entities are infectious. The finding that cell-derived small infectious PrP res aggregates can be recovered in the absence of strong in vitro denaturating treatments now gives a biological basis for investigating the role of small PrP aggregates in the pathogenicity and/or the multiplication cycle of prions.Prion diseases are caused by the misfolding of the endogenously expressed PrP protein, and the most widely accepted model of prion multiplication is that abnormally folded PrP recruits and converts the host PrP into new abnormal forms (1-3). Historically, abnormal PrP was operationally defined as insoluble and resistant to protease digestion (4) and was subsequently termed PrP res . 4 Although normal PrP protein is soluble in detergents and sensitive to proteinase K (PK) digestion, part of PrP in infected tissues is PK-resistant and recovered in the pellets of centrifuged samples. These large PrP res aggregates are infectious (5), but it is unclear whether infectivity is entirely congruent with these species (6, 7) or whether they are the more efficient species to promote infection. Efficient transmission in the absence of detectable typical PrP res has been observed in some models of prion diseases (8, 9), and in other situations, infectivity and the bulk of large PrP res aggregates have distinct sedimentation profiles in density gradients (10). In addition, large aggregates of PrP res are not the only abnormal forms in diseased tissues, as exemplified by the characterization of PKsensitive abnormal forms of . Collectively, these and other findings (16) indicated that abnormal PrP is a set of diverse populations, displaying various biochemical properties and different morphological deposits in the brain, and their biological properties have yet to be established. Here, we investigated the diversity of infectious abnormal PrP species in a cell line and in neuronal primary cultures infected with a sheep scrapie agent. Although we obtained no evidence for the presence of PK-sensitive infectivity, we identified a previously unnoticed abnormal PrP species. Solubility and ultrafiltration assays indicate that these PK-resistant PrP entities are small aggregates. These species are infectious and may explain the perplexing presence of infectivity in brain samples devoid o...