We have compared the amino acid sequences of proteins that are involved in acetylcholine (AcCho) metabolism and cholinergic neurotransmission: choline acetyltransferase (ChoAcTase), acetylcholinesterase (AcChoEase), and a neuronal a subunit of nicotinic AcCho receptor (AcChoR In addition, a nicotinic a-subunit-type AcChoR has been isolated from a rat pheochromocytoma cell line, PC12, and is thought to represent a neuronal type AcChoR (9). Recently, the catabolic enzyme for AcCho (acetylcholinesterase, AcChoEase) has been cloned from Torpedo californica (4), and we have isolated and sequenced a cDNA clone for the anabolic enzyme choline acetyltransferase (ChoAcTase) of Drosophila melanogaster (3). Even though we only know the sequences for these macromolecules in different species of divergent evolutionary phylogeny, a comparison of their sequences reveals several interesting features. In addition, we describe a detailed analysis of the surprising homology between Torpedo AcChoEase and rat thyroglobulin (TG).
METHODSThe amino acid sequence of Drosophila ChoAcTase (728 residues) has been deduced from the sequence of a cDNA clone, pCha-2 (3), and partially confirmed by microsequencing several tryptic peptides isolated from purified ChoAcTase (15). Homologous sequences reported in this paper were identified by visual inspection of the deduced amino acid sequences from published cDNA sequences. Final alignments were optimized by using the Wilbur and Lipman algorithm (16) (i.e., the ALIGN program available through BIONET). Sequence homology searches were performed on BIONET by using the IFIND program and searching the European Molecular Biology Laboratory (EMBL) and GenBank DNA sequence data basesl and the National Biomedical Research Foundation protein sequence data base. II RESULTS AND DISCUSSION A comparison of the amino acid or nucleic acid sequence of Drosophila ChoAcTase with the data bases revealed neither significant local nor global homology. The best homology to the ChoAcTase cDNA sequence was found for epidermal growth factor precursor cDNA (17, 18) (47%), but most of the matches were out of reading frame with respect to ChoAcTase. The following analysis was performed on sequences not yet represented in the data bases.Homologous Domains in Drosophila ChoAcTase and Torpedo AcChoEase. There is a striking global homology between Drosophila ChoAcTase and Torpedo AcChoEase. Alignment of six polypeptide segments along the length of the two