Sphingolipids comprise a complex group of lipids concentrated in membrane rafts and whose metabolites function as signaling molecules. Sphingolipids are conserved in Drosophila, in which their tight regulation is required for proper development and tissue integrity. In this study, we identified a new family of Drosophila sphingolipids containing two double bonds in the long chain base (LCB). The lipids were found at low levels in wild-type flies and accumulated markedly in Drosophila Sply mutants, which do not express sphingosine-1-phosphate lyase and are defective in sphingolipid catabolism. To determine the identity of the unknown lipids, purified whole fly lipid extracts were separated on a C18-HPLC column and analyzed using electrospray mass spectrometry. The lipids contain a LCB of either 14 or 16 carbons with conjugated double bonds at C4,6. The Sphingolipids are a diverse group of membrane lipids that are highly conserved throughout evolution (1, 2). In mammalian cells, sphingolipid structure, composition, and metabolism have been well characterized. Knowledge of sphingolipid structure has facilitated in-depth analyses of the contribution of sphingolipids to membrane organization and their function in signal transduction events and normal physiology. Such studies have defined an important role for higher order sphingolipids in the formation of membrane subdomains (lipid rafts) wherein growth factor signaling and recruitment occur (3-6), and sphingolipid metabolites have been shown to participate in signaling pathways regulating the key processes of cellular proliferation, migration, stress responses, programmed cell death, angiogenesis, and immune cell trafficking (7-12).We have been exploring the physiological roles of sphingolipids in the genetically tractable organism, Drosophila melanogaster. In this species, tight regulation of sphingolipid levels is required for proper development, reproduction, and the maintenance of tissue integrity, as demonstrated by the severe phenotypes observed in mutants with disrupted sphingolipid metabolism (13-17). However, a clear understanding of the role of sphingolipid metabolism and, in particular, the mechanisms by which sphingolipid metabolites influence physiological processes in this organism has been hampered by an incomplete knowledge of the chemical structures of endogenous Drosophila sphingolipids and their metabolic products.Previously, we found that the Drosophila free sphingoid bases or long chain bases (LCBs) are composed largely of C 14 -and C 16 -sphingosine and dihydrosphingosine (18). In the current study, we have identified a second family of sphingolipids recognized by their differential separation on HPLC compared with known Drosophila sphingolipid species. Mass spectrometry approaches were used to characterize the structures of these unknown lipids as C 14 -and C 16 -sphingadienes with D-4,6 conjugated double bonds and to further identify a family of related lipids built upon the same D Abbreviations: dsRNA, double-stranded RNA; LCB, long...