The common human-biting tick,
Ixodes pacificus
, is the primary vector of the Lyme disease spirochete,
Borrelia burgdorferi
sensu stricto (ss) in western North America and has been found to harbor other closely-related spirochetes in the
Borrelia burgdorferi
sensu lato (sl) complex. Between 2008–2015, 11,066 adult and 3,815 nymphal
I
.
pacificus
and five adult and 144 nymphal
Ixodes spinpalpis
, a commonly collected wildlife tick, were collected from 42 California counties.
Borrelia burgdorferi
sl was detected in 1.2% and 3.8%
I
.
pacificus
adults and nymphs, respectively. Results from this study indicate genetic diversity and geographic structure of
B
.
burgdorferi
sl in California
I
.
pacificus
ticks, by sequence comparison of the16S rRNA gene, with
B
.
burgdorferi
ss, the agent of Lyme disease, found only in
I
.
pacificus
collected from the north and central coastal and Sierra Nevada foothill regions;
B
.
burgdorferi
ss was not detected in ticks tested from southern California. In contrast,
Borrelia bissettiae
, a member of the
B
.
burgdorferi
sl complex, was detected in both
I
.
pacificus
and
I
.
spinipalpis
, in the coastal region of both northern and southern California, but was absent from ticks in the Sierra Nevada foothills. In a similar pattern to
B
.
bissettiae
,
Borrelia americana
(a member of the
B
.
burgdorferi
sl complex) was detected in a single adult
I
.
pacificus
from the north coast and two
I
.
spinipalpis
nymphs from south-coastal California. This study highlights that the geographic area of Lyme disease acarological risk in California is the north-central and Sierra Nevada foothill regions of the state with little to no risk in the southern regions of the state.