Cattle are a known reservoir of Shiga toxin-producing Escherichia coli. The prevalence and stability of Shiga toxin and/or Shiga toxin genes among native wild ungulates in Idaho were investigated. The frequency of both Shiga genes and toxin was similar to that reported for Idaho cattle (ϳ19%).First described in 1982, enterohemorrhagic Escherichia coli have emerged as a major cause of human morbidity. Shiga toxin (Stx)-producing E. coli (STEC) are considered zoonotic emerging infectious agents (1). For a comprehensive review of STEC disease and virulence factors, see references 2, 3, 4, 8, 20, 21, and 26. A recognized relationship exists between STEC infections (especially O157-H7) and the association of cattle and humans (12,27), notably in Idaho, where STEC occurrence in both humans and cattle is high (R. L. Smith, J. J. Gilbreath, and K. M. Spiegel, unpublished data). STEC are transferred by the fecal-oral route, so wild animals and cattle sharing common areas would likely experience interspecies transfer (23). Although not studied extensively, O157:H7 isolates have been identified in wild deer (7,9,10,23,24) and have been implicated in at least one human infection (16,27).Nonetheless, wild deer are rarely screened for either Shiga toxin or its genes.Fecal pellets (collected from live mule deer and elk in Idaho from December 2005 to March 2006) cultured in tryptic soy broth (TSB) (Becton Dickinson, Franklin Lakes, NJ) at 37°C were screened for Shiga toxin (Remel ProSpecT Shiga toxin microplate ELISA kit; Remel, Inc., Lexena, KS) and the stx 1 , stx 2 , eae (intimin), and ehx (enterohemolysin, also known as hemolysin A [hlyA]) genes (25) from total DNA (isolated using the Puregene DNA purification system [Gentra, Minneapolis, MN]) via PCR (Table 1).Fecal cultures (n ϭ 160) screened in this manner yielded 31/160 (19.4%) positive for Shiga toxin or the stx 1 or stx 2 genes (Table 2). From this pool, 26/31 (83.9%) amplified either stx 1 or stx 2 genes but no toxin was detected, while 5/31 (16.1%) exhibited both stx genes and toxin. The breakdown of the stx gene content was as follows: 15/26 (45.5%), stx 1 only; 10/31 (30.3%), stx 2 only; and 5/31 (15.2%), stx 1 and stx 2 .Fecal cultures testing positive via enzyme-linked immunosorbent assay (ELISA) and/or PCR were plated on sorbitol MacConkey agar (Becton Dickinson, Franklin Lakes, NJ) 18 to 24 h at 37°C. Both fermenter and nonfermenter colonies were transferred to TSB and incubated overnight at 37°C. These enriched subcultures were rescreened by ELISA and PCR. To ensure axenic cultures, isolates were regrown overnight at 37°C in R2 broth (Remel, Lexena, KS), streaked to R2 agar, and incubated overnight at 37°C. Isolates were then grown similarly in LB broth (Becton Dickinson, Franklin Lakes, NJ) and streaked for isolation onto LB agar, yielding axenic isolates (n ϭ 156).From each of the 11 amplitypes (described below), 10 to 15 randomly chosen colonies were transferred to grid coordinates on LB agar. Colony-lift hybridization studies were done using radioactiv...