The clinical and environmental importance of Stenotrophomonas bacteria requires thorough, molecular studies on their epidemiology and taxonomy. In order to obtain a complete genomic profile of this genus, over I00 Stenotrophomonas maltophilia strains from various origins were investigated by AFLP fingerprinting. A subset of these strains was analysed by DNA hybridization and 16s rDNA sequencing. In contrast to their high phenotypic homogeneity, the strains were found to be very heterogeneous genotypically by AFLP fingerprinting. Nevertheless, ten cores of highly similar strains representing ten genomic groups were observed. The same groups could be retrieved by DNA hybridizations and also, partly, by 16s rDNA sequence analysis. The intergroup DNA similarities were too high to create confident species delineations, neither could the genomic groups be characterized by phenotypic features.1 Keywords: Stenotrophomonas maltophilia, genomic groups, AFLP fingerprinting 1
INTRODUCTIONStenotrophomonas maltophilia (Palleroni & Bradbury, 1993), formerly named Pseudomonas maltophilia (Hugh, 198 1) and Xanthomonas maltophilia (Swings et al., 1983), is a commonly found ubiquitous bacterium. It is increasingly prevalent in hospitals as an opportunistic human pathogen causing nosocomial infections. The numerous recent literature reports, dealing with S. maltophilia infections and outbreaks, emphasize the importance of this rapidly emerging clinical pathogen. S . maltophilia is a causal agent of infection and colonization of immunocompromised cancer and HIV patients and transplant recipients (Nagai, 1984; Roilides et al., 1992;Spencer, 1995) and has been reported as a cause of bacteraemia and infections of the respiratory tracts (Fisher et al., 1981) and urinary tracts (Vartivarian et al., 1996), post-operative infections (Fisher et al., 198 l), ocular infections (Penland & Wilhelmus, 1996) and a variety of other disease syndromes . The low outer membrane permeability and the ability to produce plactamases with broad-spectrum activity are responsible for the high degree of resistance towards most commonly used broad-spectrum antibiotics such as penicillins and carbapenems (Mett et al., 1988 ; LescoBornet & Bergogne-Berezin, 1997 ;Norrby, 1995 ;Sanders & Sanders, 1992). Retrospective studies have shown that S. maltophilia is the second most frequently isolated nosocomial bacterium after Pseudomonas aeruginosa (Zuravleff & Yu, 1982) and that its impact as a multidrug-resistant pathogen increases significantly (Heath & Currie, 1995;Suzuki et al., 1995). The growing clinical importance of S . maltophilia infections has recently been reviewed by Denton & Kerr (1 998). In the environment, S . maltophilia has been isolated as a growth promoting or symbiotic agent from the rhizosphere of plants and crops including chicory, wheat and crucifers (Debette & Blondeau, 1980;Juhnke et al., 1987) Yao et al., 1995) and PFGE (Yao et al., 1995), only a few strains from the same intensive care unit showed identical genomic profiles, thus sugge...