Acquisition of multiple genetic strains of a single dermatophyte species should not be unexpected in areas of high endemicity, and yet multistrain infections are infrequently reported. This communication details mixed Trichophyton tonsurans infections and highlights the need to confirm the presence of multiple strains in a clinical single isolate by use of a multilocus approach.Clinical and epidemiological investigations, along with population-based evolutionary studies, all benefit from the ability to distinguish pathogen strains. Without the ability to reliably discriminate variants within a species one cannot adequately determine the extent of genetic variation within and between pathogen populations, investigate the origins of phenetic diversity within a species, or gain insight into the relationship between the organism and its host (17). For many fungal pathogens, strain-typing methods have been developed for neutrally evolving areas of the genome, with typing strategies aimed at detecting intraspecific genetic variation in the dermatophytes almost exclusively represented by the ribosomal DNA (rDNA) locus (9,10,11,16,18,21).The rDNA region remains popular for investigations of microbial pathogens. The intergenic spacer is known to exhibit a large degree of variation, and the highly conserved flanking rDNA genes make it relatively easy to target the region. Nevertheless, it is not uncommon for papers describing straintyping methods using this region to report amplification patterns that are difficult to interpret (11,12). We similarly reported challenges with initial attempts at characterizing this region from Trichophyton tonsurans. However, careful optimization of the PCR amplification procedures ensured a singular, discernible pattern for each strain in the validation set (9). Yet subsequent application of our PCR-restriction fragment length polymorphism (PCR-RFLP)-based strain-typing methods to a large-scale epidemiologic investigation revealed composite RFLP patterns at this locus (2). Notably, examining coding region variations in conjunction with variations in the rDNA locus offered evidence that these patterns were consistent with infections comprised of more than one strain.Given that clinically derived samples and samples acquired in large-scale studies are rarely plated in a clonal fashion, typing strategies require the ability to discriminate mixed infections (i.e., infections by more than one strain). This is particularly relevant when studies are conducted in areas of high endemicity where more than half of the relevant sample population may be harboring the pathogen and multiple strain types are known to occur. This communication provides details on multistrain T. tonsurans infections confirmed from a single clinical isolate by use of a multilocus approach.
MATERIALS AND METHODSClinical isolates. The T. tonsurans isolates described for this investigation were obtained from a prospective epidemiologic investigation reported on previously by the investigators (2). Scalp cultures were performed ...