Isomerism, conformations, and molecular structure of a model molecule of vitamin K 1 with a truncated side chain have been studied by the density functional theory calculations using B3LYP method and double-and triple-f correlation consistent basis sets. The conformations of two possible (E and Z) isomers, formed by the rotations around three single C-C bonds closest to the naphthoquinone ring, have been studied. The lowest energy conformers are stabilized by additional hydrogen bonds between hydrogen atoms of the side chain and an oxygen atom in the naphthoquinone subunit. It is interesting to note that the structure of the energetically preferred conformer of the E-isomer (3c) has been found to be similar to the solid state structures of phylloquinones in the photosystem I of cyanobacterium Synechococcus elongatus. The excited electronic states of two lowest energy conformers have also been investigated.