The heme group of myeloperoxidase is covalently linked via two ester bonds to the protein and a unique sulfonium ion linkage involving Met 243 . Mutation of Met 243 into Thr, Gln, and Val, which are the corresponding residues of eosinophil peroxidase, lactoperoxidase, and thyroid peroxidase, respectively, and into Cys was performed. The Soret band in the optical absorbance spectrum in the oxidized mutants is now found at approximately 411 nm. Both the pyridine hemochrome spectra and resonance Raman spectra of the mutants are affected by the mutation. In the Met 243 mutants the affinity for chloride has decreased 100-fold. All mutants have lost their chlorination activity, except for the M243T mutant, which still has 15% activity left. By Fourier transform infared difference spectroscopy it was possible to specifically detect the 13 CD 3 -labeled methionyl sulfonium ion linkage. We conclude that the sulfonium ion linkage serves two roles. First, it serves as an electron-withdrawing substituent via its positive charge, and, second, together with its neighboring residue Glu 242 , it appears to be responsible for the lower symmetry of the heme group and distortion from the planar conformation normally seen in heme-containing proteins.In the family of mammalian peroxidases, myeloperoxidase (MPO) 1 is an extraordinary peroxidase. First of all, the enzyme is the only mammalian peroxidase known to peroxidize chloride to hypochlorous acid at a substantial rate. Secondly, MPO differs in its spectroscopic characteristics by its unusual redshifted Soret band in the optical absorbance as well in its pyridine hemochrome spectrum, its complicated resonance Raman spectrum, and its inverted sign pattern of the Soret band in the MCD spectrum (1-6). Those differences have been attributed to the special nature or structure of the heme group in MPO. Because this heme is covalently bound to the protein, characterization of this chromophore has been difficult. Based on different spectroscopic techniques, a formyl-containing heme a, a chlorin, and a heme b prosthetic group have been proposed in the past (3,5,(7)(8)(9).Although the enzyme differs in spectroscopic and catalytic properties, the homology between MPO and the other mammalian peroxidases is high. MPO shares respectively 70, 61, and 47% identical residues with eosinophil peroxidase (EPO), lactoperoxidase (LPO), and thyroid peroxidase (TPO) (10 -12), and an even higher homology can be found among the residues in the active site. MPO is the only mammalian peroxidase for which a crystal structure is known, at 2.3 Å resolution (13). The structural data for human MPO suggested that three heme substituents form covalent bonds with amino acid side chains in the protein. Two ester bonds were claimed to be present, between modified methyl groups on pyrrole rings A and C and the amino acids Glu 242 and Asp 94 . In a recent study, we have provided the first direct evidence by FTIR difference spectroscopy that ester bonds link the heme groups in all mammalian peroxidases via the conser...