Riboflavin (vitamin B 2 ) serves as a precursor of the flavinnucleotide cofactors riboflavin monophosphate (FMN) 1 and flavin adenine dinucleotide (FAD). The formation of FAD depends on the sequential utilization of two molecules of ATP in reactions that first involve the riboflavin (flavokinase, EC 2.7.1.26) kinase-phosphorylation of riboflavin to form FMN and then FAD (EC 2.7.7.2) synthetase-catalyzed adenylylation of the latter to form FAD. The enzymes responsible for catalyzing the two steps have been purified from several sources (1-9). In Corynebacterium ammoniagenes and Bacillus subtilis, flavokinase and FAD synthetase co-purify and are present in a single, bifunctional flavokinase/FAD synthetase enzyme (7, 10). To date, a large number of homologs to the bifunctional flavokinase/FAD synthetase ribC gene of B. subtilis have been identified in archaea and eubacteria, indicating that this type of gene organization is common in prokaryotes. In contrast, both enzymatic activities have been purified separately in eukaryotic organisms (1,6,8). In mammalian tissues, the smaller flavokinase (1) is readily separable from the larger FAD synthetase (3). In the yeast Saccharomyces cerevisiae, the gene encoding a monofunctional FAD synthetase (FAD1) has recently been cloned as an extragenic suppressor of a respiratory deficient pet mutant (11). However, the gene encoding flavokinase in yeast as well as in the rest of eukaryotic organisms remains to be identified.The formation of holo-flavoproteins, by binding of the coenzyme to the apo-protein, depends on the availability of the cognate flavocoenzyme. It is known that most cell flavoproteins are located in the mitochondria but little is known about the subcellular distribution of the enzymes involved in flavin metabolism. It has been described that flavokinase is a cytosolic enzyme in plant and mammalian tissues (4, 6) and the synthesis of FMN and FAD occurs in hepatocyte cytosol (12). However, the synthesis of both flavocoenzymes from externally added riboflavin by isolated mitochondria from rat liver has been also reported (13). Whereas it has been determined that the synthesis of riboflavin occurs in the cytosol of S. cerevisiae cells (14, 15), the exact location of the synthesis of FMN and FAD and their compartmentation is controversial in this organism. It has been reported that yeast mitochondria do not contain FAD synthetase and that a specific mitochondrial carrier protein, Flx1p, is involved in flavin transport across the mitochondrial membrane (16). However, it has also been described that FMN and FAD synthesis occurs in isolated yeast mitochondria (17) and that yeast cells overexpressing the FAD1 gene show mitochondrial FAD synthetase activity (11).Homeostasis of flavin coenzymes is achieved by an intricate interplay of the different enzymes in the pathway responding to regulators (18), by organelle compartmentation (11,19), and by altered susceptibility of holo-and apo-flavoproteins to proteolytic digestion (20). Since yeast and other eukaryotes share the...