Human arginase I is a potential target for therapeutic intervention in diseases linked to compromised L-arginine homeostasis. Here, we report high-affinity binding of the reaction coordinate analogue inhibitors 2(S)-amino-6-boronohexanoic acid (ABH, K d ؍ 5 nM) and S-(2-boronoethyl)-L-cysteine (BEC, Kd ؍ 270 nM) to human arginase I, and we report x-ray crystal structures of the respective enzyme-inhibitor complexes at 1.29-and 1.94-Å resolution determined from crystals twinned by hemihedry. The ultrahighresolution structure of the human arginase I-ABH complex yields an unprecedented view of the binuclear manganese cluster and illuminates the structural basis for nanomolar affinity: bidentate inner-sphere boronate-manganese coordination interactions and fully saturated hydrogen bond networks with inhibitor ␣-amino and ␣-carboxylate groups. These interactions are therefore implicated in the stabilization of the transition state for L-arginine hydrolysis. Electron density maps also reveal that active-site residue H141 is protonated as the imidazolium cation. The location of H141 is such that it could function as a general acid to protonate the leaving amino group of L-ornithine during catalysis, and this is a revised mechanistic proposal for arginase. This work serves as a foundation for studying the structural and chemical biology of arginase I in the immune response, and we demonstrate the inhibition of arginase activity by ABH in human and murine myeloid cells.boronic acid ͉ metalloenzyme ͉ protein crystallography A rginase is a trimeric binuclear manganese metalloenzyme that catalyzes the hydrolysis of L-arginine to form L-ornithine and urea (1-3). Two isozymes have been identified in mammals: arginase I catalyzes the final cytosolic step of the urea cycle in liver, and arginase II is a mitochondrial enzyme that functions in Larginine homeostasis in nonhepatic tissues. Notably, arginase I is also expressed in certain nonhepatic tissues where it, too, can function in L-arginine homeostasis. For example, arginase I may regulate substrate L-arginine bioavailability to NO synthase in the immune response. Macrophage arginase I and NO synthase are reciprocally regulated at the level of transcription: NO synthase is induced by T-helper type 1 (TH1) cytokines, and arginase I is induced by T-helper type 2 (TH2) cytokines (4-7). As a modulator of NO-dependent macrophage cytotoxicity, arginase I is implicated in the regulation of macrophage activity in wound healing (8) and the suppression of the tumoricidal activity of macrophages (9) and T cells (10). Notably, arginase I is very highly up-regulated in the murine spinal cord during experimental autoimmune encephalomyelitis, an animal model for human multiple sclerosis (11), and it is up-regulated in the inflammatory regions of the asthmatic lung (12)(13)(14).Arginase I in the immune response is also implicated in cancer biology: arginase I is significantly up-regulated and promotes tumor cell growth in breast cancer (15, 16) and colorectal cancer (17). Rodriguez et a...