Amorphous
molybdenum sulfide (MoS
x
)
is a potent catalyst for the hydrogen evolution reaction (HER). Since
mechanistic investigations on amorphous solids are particularly difficult,
we use a bottom-up approach and study the [Mo
3
S
13
]
2–
nanocluster and its protonated forms. The mass
selected pure [Mo
3
S
13
]
2–
as
well as singly and triply protonated [HMo
3
S
13
]
−
and [H
3
Mo
3
S
13
]
+
ions, respectively, were investigated by a combination
of collision induced dissociation (CID) experiments and quantum chemical
calculations. A rich variety of H
x
S
y
elimination channels was observed, giving
insight into the structural flexibility of the clusters. In particular,
it was calculated that the observed clusters tend to keep the Mo
3
ring structure found in the bulk and that protons adsorb
primarily on terminal disulfide units of the cluster. Mo–H
bonds are formed only for quasi-linear species with Mo centers featuring
empty coordination sites. Protonation leads to increased cluster stability
against CID. The rich variety of CID dissociation products for the
triply protonated [H
3
Mo
3
S
13
]
+
ion, however, suggests that it has a large degree of structural
flexibility, with roaming H/SH moieties, which could be a key feature
of MoS
x
to facilitate HER catalysis via
a Volmer−Heyrovsky mechanism.