A rabbit antiserum was raised against the photoactive yellow protein (PYP) from Ectothiorhodospira halophila and purified by adsorption experiments to obtain a highly specific polyclonal antiserum. This antiserum was used to obtain the following results. (i) In E. halophila, PYP can be isolated from the fraction of soluble proteins. In the intact cell, however, PYP appeared to be associated with (intra)cytoplasmic membranes, as was concluded from analysis of immunogold-labelled thin sections of the organism. (ii) The regulation of expression of PYP was studied by using dot blot assays, Western blotting (immunoblotting), and rocket immunoelectrophoresis. Under all conditions investigated (light color, salt concentration, and growth phase), PYP was expressed constitutively in E. halophila. However, when Rhodospirillum salexigens was grown aerobically, the expression of PYP was suppressed. (iii) A large number of prokaryotic microorganisms contained a single protein, with an apparent size of approximately 15 kDa, that cross-reacted with the antiserum. Among the positively reacting organisms were both phototrophic and chemotrophic, as well as motile and nonmotile, organisms. After separation of cellular proteins into a membrane fraction and soluble proteins, it was established that organisms adapted to growth at higher salt concentrations tended to have the cross-reacting protein in the soluble fraction. In the cases of R. salegens and Chromatium salexigens, we have shown that the cross-reacting protein involved is strongly homologous to PYP from E. halophila.Membrane-bound photoactive proteins are known to function in Halobacterium halobium. In this organism and in related bacteria, retinal-containing proteins have a role in light energy transduction and in phototactic responses (for reviews, see references 29 and 31). A few years ago, the presence of a water-soluble protein of 14 kDa with a distinct yellow color was described in the purple sulfur eubacterium Ectothiorhodospira halophila (15). This protein is photoactive: it displays a photocycle that is quite similar to the photocycle of the sensory rhodopsins (10,20,22,23). Its three-dimensional structure, which is unrelated to the structure of the bacterial rhodopsins, has been elucidated at 2.4-A (0.24-nm) resolution (14). It consists of two perpendicular plates of A sheet, forming a ,3-clam structure, also observed in a number of eukaryotic proteins. Evidence indicating that the protein functions as the photoreceptor in a negative phototactic response has been obtained (28). Despite the photochemical and functional similarities between the photoactive yellow protein (PYP) and the sensory rhodopsins, the chromophoric group in PYP is not retinal (33).Recently, PYPs were purified from Rhodospirillum salexigens (19) and Chromatium salexigens (18). Therefore, PYP is now known to be present in halophilic representatives of three * Corresponding author. Mailing address: