The molecular ecology of Staphylococcus aureus, Staphylococcus pseudintermedius and their methicillinâresistant strains in healthy dogs and cats could serve as good models to understand the concept of bacterial zoonosis due to animal companionship. This study aims to provide insights into pooled prevalence, genetic lineages, virulence and antimicrobial resistance (AMR) among healthy dogs and cats. Original research and brief communication articles published from 2001 to 2021 that reported the nasal detection of S. aureus and S. pseudintermedius in healthy dogs and cats in the community, homes and outside veterinary clinics were examined and analysed. Fortyânine studies were eligible and included in this systematic review. The pooled prevalence of nasal carriage of S. aureus/methicillinâresistant S. aureus (MRSA) in healthy dogs and cats were 10.9% (95% CI: 10.1â11.9)/2.8% (95% CI: 2.4â3.2) and 3.2% (95% CI: 1.9â4.8)/0.5% (95% CI: 0.0â1.1), respectively. Conversely, the pooled prevalence of S. pseudintermedius/methicillinâresistant S. pseudintermedius (MRSP) in healthy dogs and cats were 18.3% (95% CI: 17.1â19.7)/3.1% (95% CI: 2.5â3.7) and 1.3% (95% CI: 0.6â2.4)/1.2% (95% CI: 0.6â2.3), respectively. Although highly diverse genetic lineages of S. aureus were detected in healthy dogs and cats, MSSAâCC1/CC5/CC22/CC45/CC121/CC398 and MRSAâCC5/CC93/CC22/CC30 were mostly reported in dogs; and MSSAâCC5/CC8/CC15/CC48 and MRSAâCC22/CC30/CC80 in cats. Of note, MSSAâCC398 isolates (spaâtypes t034 and t5883) were detected in dogs. Genetic lineages often associated with MSSP/MRSP were ST20/ST71, highlighting the frequent detection of the epidemic European MRSPâST71 clone in dogs. S. aureus isolates carrying the lukâS/FâPV, tst, eta, etb and etd genes were seldomly detected in dogs, and lukâS/FâPV was the unique virulence factor reported in isolates of cats. S. pseudintermedius isolates harbouring the lukâS/FâI, seint and expA genes were frequently found, especially in dogs. High and diverse rates of AMR were noted, especially among MRSA/MRSP isolates. There is a need for additional studies on the molecular characterization of isolates from countries with underâstudied nasal staphylococci isolates.