Transcription factor GATA4 regulates cardiac and osteoblast differentiation. However, its role in tooth development is not clear. Therefore, we generated Wnt1-Cre;GATA4 fl/fl mice, with conditional inactivation of the GATA4 gene in the dental papilla mesenchymal cells. Phenotypic analysis showed short root deformity along with reduced expressions of odonto/osteogenic markers. Proliferation (but not apoptosis) of cells around the apical area of the root was attenuated. In vitro, we knocked down GATA4 expression in stem cells of dental apical papilla (SCAPs). Proliferation, migration and odonto/ osteogenic differentiation of SCAPs were affected in the shGATA4 group. Overexpression of GATA4 in SCAPs increased mineralization. Based on our previous iTRAQ results, guanine nucleotide binding proteins 3 (GNAI3) is one of the distinct proteins after GATA4 deletion. G protein signaling is involved in bone development, remodeling, and disease. In this study, both GATA4 deletion in the mouse root and knock-down in human SCAPs decreased the expression of GNAI3. Dual-luciferase and ChIP assay confirmed the direct binding of GATA4 to the GNAI3 promoter, both in vitro and in vivo. GNAI3 knockdown significantly decreased the odonto/osteogenic differentiation ability of SCAPs. We thus establish the role of GATA4 as a novel regulator of root development and elucidate its downstream molecular events.Development of tooth root occurs after crown formation and the process involves reciprocal epithelio-mesenchymal interactions 1, 2 . The hard tissue of tooth is comprised of enamel, dentin, and cementum. Dental epithelial cells are the precursors of ameloblasts which in turn form the enamel. Odontoblasts differentiate from dental papilla mesenchymal cells and form the dentin. Dental follicle cells are genuine precursors of cementoblasts which in turn differentiate into cementoblasts. Both odontoblasts and cementoblasts are derived from neural crest cells (NCCs).GATA binding protein 4 (GATA4) is a zinc finger-containing transcription factor, and is reported to play a vital function in cardiac and intestinal development 3, 4 . GATA4 also regulates the expression of the angiogenic marker vascular endothelial growth factor (VEGF), and VEGF was reported to promote embryonic jaw extension 5,6 . According to our own previous microarray results (unpublished data), GATA4 expression in the embryonic mouse maxillofacial tissues at embryo day 13.5 (E13.5) was significantly higher than that at E18.5. This result suggests a vital role of GATA4 in the development of the maxillofacial tissues. Besides, several studies have indicated a role of GATA4 in the regulation of osteoblasts 7,8 . The development of both bone and tooth has several common features. Both MSCs from bone marrows and SCAPs were as potent in osteo/dentinogenic differentiation 9 . This aroused our interest in studying the effect of GATA4 in tooth development. So far, the involvement of GATA4 in tooth development has never been reported. One of the reasons is that global knockout of GATA...