The aetiology of sporadic medullary thyroid carcinoma is unknown. About 50% harbour a somatic mutation at codon 918 of RET (M918T). To investigate whether other RET sequence variants may be associated with or predispose to the development of sporadic medullary thyroid carcinoma, we analysed genomic DNA from the germline and corresponding tumour from 50 patients to identify RET sequence variants. In one patient, tumour DNA showed a novel somatic 12 bp in-frame deletion in exon 15. More interestingly, we found that the rare polymorphism at codon 836 (c.2439C4T; S836S) occurred at a signi®cantly higher frequency than that in control individuals without sporadic medullary thyroid carcinoma (Fisher's exact test, P=0.03). Further, among the nine evaluable cases with germline c.2439C/T, eight also had the somatic M918T mutation in MTC DNA which was more frequent than in patients with the more common c.2439C/C (89% vs 40%, respectively; Fisher's exact test, P=0.01). These ®ndings suggest that the rare sequence variant at codon 836 may somehow play a role in the genesis of sporadic medullary thyroid carcinoma.Keywords: tyrosine kinase; polymorphism; germline mutation; somatic mutation; medullary thyroid cancer Medullary thyroid carcinoma (MTC) comprises approximately 5 ± 10% of all thyroid malignancies (Bergholm et al., 1990). About 75% of all MTCs are believed to be sporadic (Bergholm et al., 1990;Raue et al., 1993), and the remaining 25% comprise the autosomal dominant multiple endocrine neoplasia type 2 (MEN 2) syndromes, MEN 2A, MEN 2B and familial MTC (Farndon et al., 1986;Schimke, 1984). Germline mutations of the RET protooncogene a ecting exons 10, 11, 13, 14, 15 and 16 have been found to be associated with MEN 2 (Bolino et al., 1995;Carlson et al., 1994;Donis-Keller et al., 1993;Eng et al., 1994Eng et al., , 1995Farndon et al., 1986;Gimm et al., 1997;Hofstra et al., 1994;Mulligan et al., 1993;Schimke, 1984; Smith et al., 1997). Speci®cally, germline mutation at codon 918 (M918T) in exon 16 is associated with 495% of MEN 2B , which is characterized by a more severe form of MTC and phaeochromocytoma occurring at a young age and classic stigmata such as ganglioneuromatosis and a marfanoid habitus. Functional, biochemical and limited animal modelling studies have demonstrated that the RET mutations which characterize MEN 2 are capable of activation, sometimes in a constitutive manner, of the RET signalling pathway (Borrello et al., 1995;Ceccherini et al., 1997;Michiels et al., 1997;Pasini et al., 1997;Santoro et al., 1995). The MEN 2B-type mutation, M918T, has been shown to alter substrate speci®city (Borrello et al., 1995;Santoro et al., 1995;Songyang et al., 1995). Interestingly, a median of 50% of sporadic MTC harbour somatic M918T mutations (Eng and Mulligan, 1997). Despite our rapidly accumulating knowledge of the genetics and biochemistry of RET, it is not really known how M918T occurs. Further, while a number of the MEN 2-and MTC-associated RET mutations have been shown to be functionally signi®cant, it is no...