The [Fe4S4] compositions are ubiquitous in biological systems as integral parts of the complex catalytic mechanisms as in hydrogenases and nitrogenases. The current reports about [Fe4S4] species are based on the cube-like structure framework. Here, the topological structures, stability and electronic properties of gas phase [Fe4S4]+, [Fe4S4]0 and [Fe4S4]- are analyzed. It is found that ground state structures of these three clusters have similar cubic cages but different symmetries and spin multiplicities. The molecular dynamics simulations demonstrate that the cubic cage remains thermodynamically stable at 700 K. The density of states show that the charge state is the key to affect electronic behaviors of them even under the same structural framework. The molecular orbitals show that the LUMO orbitals are distributed throughout whole structures, showing great delocalized characteristics, especially for the anionic [Fe4S4]-, while the HOMO orbits are mainly localized in Fe-S bonds, which are also confirmed by the electron localization function analyses. After one CO molecule is adsorbed on these clusters, it prefers to locate at the Fe atoms. Moreover, the C-O bond length and vibration frequency of the [Fe4S4]--CO undergone a significant red shift. Our work shows that the [Fe4S4]- may act as a potential catalyst for activating the C-O bond.