Ubiquitin conjugation typically requires three classes of enzyme: E1, E2, and E3. A fourth type of enzyme (E4), however, was recently shown to be required for the degradation of certain types of substrate in yeast. We previously identified UFD2a (also known as E4B) as an E4 in mammals. UFD2a is exclusively expressed in cardiac muscle during mouse embryonic development, but it is abundant in neurons of adult mice and is implicated in the pathogenesis of neurodegenerative disease. The precise physiological function of this enzyme has remained largely unknown, however. Here, we show that mice lacking UFD2a die in utero, manifesting marked apoptosis in the developing heart. Polyubiquitylation activity for an E4 substrate was greatly reduced in Ufd2a ؊/؊ mouse embryonic fibroblasts. Furthermore, Ufd2a ؉/؊ mice displayed axonal dystrophy in the nucleus gracilis, as well as degeneration of Purkinje cells accompanied by endoplasmic reticulum stress. These animals also developed a neurological disorder. UFD2a thus appears to be essential for the development of cardiac muscle, as well as for the protection of spinocerebellar neurons from degeneration induced by endoplasmic reticulum stress.The ubiquitin (Ub)-proteasome system for protein degradation plays a pivotal role in many cellular processes (10, 38). The ubiquitylation of proteins serves to mark them for degradation by the proteasome, an ATP-dependent multiprotease complex. Protein ubiquitylation is achieved by a multistep mechanism involving several enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin-protein ligase (E3). A new class of ubiquitylation enzyme, a ubiquitin chain assembly factor (E4), was recently discovered and shown to be required for the degradation of certain types of substrate, including a fusion protein with an NH 2 -terminal ubiquitin moiety, by a ubiquitin fusion degradation pathway, designated UFD (17, 21). Ufd2 of Saccharomyces cerevisiae, the prototype E4 enzyme, binds to oligoubiquitylated UFD substrate and catalyzes extension of the ubiquitin chain. Lysine-29 of the ubiquitin moiety of the UFD substrate is required for polyubiquitylation by E4. A UFD substrate molecule with a short chain of Lys-29-linked ubiquitin molecules is thus presented by the Cdc48-Ufd1-Npl4 complex to Ufd2, which then mediates further elongation of the oligoubiquitin chain in a manner dependent on Lys-48 of ubiquitin. The polyubiquitylated UFD substrate is recognized by the UBL-UBA proteins Rad23 and Dsk2 and is then degraded by the 26S proteasome (40). In yeast, Ufd2 is implicated in proteolysis by the endoplasmic reticulum (ER)-associated degradation (ERAD) pathway.Ufd2 and its homologs in other eukaryotes share a conserved domain known as the U box. The U box of Ufd2 mediates the interaction of this protein with ubiquitin-conjugated targets and therefore appears to be an essential functional domain for E4 activity. We recently showed that mammalian U-box proteins, including UFD2a (also known as E4B), also possess E3 a...