Autolysis is self-degradation of the bacterial cell wall that results in the release of enzymes and DNA. Autolysis of starter bacteria, such as lactococci and propionibacteria, is essential for cheese ripening, but our understanding of this important process is limited. This is mainly because the current tools for measuring autolysis cannot readily be used for analysis of bacteria in mixed populations. We have now addressed this problem by species-specific detection and quantification of free DNA released during autolysis. This was done by use of 16S rRNA gene single-nucleotide extension probes in combination with competitive PCR. We analyzed pure and mixed populations of Lactococcus lactis subsp. lactis and three different species of Propionibacterium. Results showed that L. lactis subsp. lactis INF L2 autolyzed first, followed by Propionibacterium acidipropionici ATCC 4965, Propionibacterium freudenreichii ISU P59, and then Propionibacterium jensenii INF P303. We also investigated the autolytic effect of rennet (commonly used in cheese production). We found that the effect was highly strain specific, with all the strains responding differently. Finally, autolysis of L. lactis subsp. lactis INF L2 and P. freudenreichii ISU P59 was analyzed in a liquid cheese model. Autolysis was detected later in this cheese model system than in broth media. A challenge with DNA, however, is DNA degradation. We addressed this challenge by using a DNA degradation marker. We obtained a good correlation between the degradation of the marker and the target in a model experiment. We conclude that our DNA approach will be a valuable tool for use in future analyses and for understanding autolysis in mixed bacterial populations.The present tools for measuring autolysis are not easily adaptable to analysis of mixed populations. This severely limits our understanding of autolysis in microbial populations, such as in cheese. Autolysis is self-degradation of the bacterial cell wall due to hydrolysis of the peptidoglycan network by autolysins (32,34,36,37), and the result is leakage of intracellular components (9, 27). Lactococcus lactis subsp. lactis and Propionibacterium freudenreichii are bacteria essential to the ripening of Norwegian Jarlsberg cheese (17). The propionibacteria produce propionic acid, acetic acid, and CO 2 , with the latter responsible for the typical eye formation. In addition, this secondary starter contributes to the characteristic sweet, nutty flavor, provided mainly by free proline (20)(21)(22). Autolysis of lactococci is important for cheese ripening, in which the release of intracellular enzymes plays an important role in cheese flavor development (9, 40, 48). The role and contribution of intracellular enzymes from propionibacteria in the ripening process are poorly understood (11,12,23,27,40). Proteolytic enzymes, such as chymotrypsin and pepsin, are reported to modify autolytic activity (28,29,38,39). Rennet, consisting of chymosin and bovine pepsin, hydrolyzes the -casein in milk and thus is a vital factor in ...