The respiratory defect of Saccharomyces cerevisiae mutants assigned to complementation group G4 of a pet strain collection stems from their failure to synthesize cytochrome oxidase. The mutations do not affect expression of either the mitochondrially or nuclearly encoded subunits of the enzyme. The cytochrome oxidase deficiency also does not appear to be related to mitochondrial copper metabolism or heme a biosynthesis. These data suggest that the mutants are likely to be impaired in assembly of the enzyme. A gene designated COX15 has been cloned by transformation of mutants from complementation group G4. This gene is identical to reading frame YER141w on chromosome 5. To facilitate further studies, Cox15p has been expressed as a biotinylated protein. Biotinylated Cox15p fully restores cytochrome oxidase in cox15 mutants, indicating that the carboxylterminal sequence with biotin does not affect its function. Cox15p is a constituent of the mitochondrial inner membrane and, because of its resistance to proteolysis, probably is largely embedded in the phospholipid bilayer of the membrane. The present studies further emphasize the complexity of cytochrome oxidase assembly and report a new constituent of mitochondria involved in this process. The existence of COX15 homologs in Schizosaccharomyces pombe and Caenorhabditis elegans suggests that it may be widely distributed in eucaryotic organisms.The completion of the Saccharomyces cerevisiae genome sequence (1) has spawned new large scale projects designed to unravel the functions of the numerous unknown reading frames. A substantial fraction of the total information in yeast chromosomal DNA is comprised of PET genes that are essential for the biogenesis of respiratory competent mitochondria. Mutations in these genes were shown in the early 1950s (2, 3) to affect the ability of yeast to respire. Renewed efforts to mutationally saturate for this class of genes (4, 5) have helped to expand our knowledge of the extent and nature of the contribution made by the nucleus toward maintenance of respiring mitochondria.Biochemical studies of pet mutants 1 have revealed that the assembly of respiratory chain enzymes is governed by an unexpectedly large number of genes. For example, some three dozen complementation groups have been reported to consist of mutants displaying a selective deficiency in cytochrome oxidase (4, 6). In addition to mutations in the structural genes, these strains are also affected in: 1) processing of the mitochondrial cytochrome oxidase pre-mRNAs (7-9), 2) translation of the resultant mRNAs (10, 11), 3) heme a biosynthesis (12), 4) copper import and transfer to the apoenzyme (13, 14), and 5) as yet poorly understood events in the pathway leading to the functional enzyme (15-17). To learn more about the assembly of this heteroligomeric membrane complex, we have continued to screen for, and to analyze pet mutants with lesions in cytochrome oxidase. In this article, we report the properties of mutants from complementation group G4 whose cytochrome oxidase d...