The fundamental process of detecting and examining the polarization modes of gravitational
waves plays a pivotal role in enhancing our grasp on the precise mechanisms behind their
generation. A thorough investigation is essential for delving deeper into the essence of
gravitational waves and rigorously evaluating and validating the range of modified gravity
theories. In this line of interest, a general description of black holes in theories beyond
general relativity can serve a meaningful purpose where distinct deviation parameters can be
mapped to solutions representing distinct theories. Employing a refined version of the deformed
Kerr geometry, which is free from pathological behaviours such as unphysical divergences in the
metric, we explore an extreme mass-ratio inspiral system, wherein a stellar-mass object perturbs a
supermassive black hole. We compute the effects of deformation parameters on the
rate of change of orbital energy and angular momentum, orbital evolution and
phase dynamics with leading order post-Newtonian corrections. With the waveform analysis, we
assess the plausibility of detecting deviations from general relativity through observations
facilitated by the Laser Interferometer Space Antenna (LISA), simultaneously constraining the
extent of these deviations. Therefore, this analysis provides an understanding while highlighting
the essential role of observations in advancing gravitational phenomena beyond general relativity.