When developing functionalized biomaterials, the proteins from extremophilic organisms, in particular unique tardigrade disordered proteins, are of great value. The damage suppressor protein (Dsup), initially discovered in the tardigrade Ramazzottius varieornatus and found to be an efficient DNA protector under oxidative and irradiation stress, has been hypothesized to possess a good potential for the development of the material, which can isolate cell‐free DNA. With this in mind, DNA‐nonadsorbing polyethylene terephthalate track membranes have been functionalized using the Dsup protein via covalent bonding with glutaraldehyde. The filtration experiments have verified the ability of track membranes with the immobilized Dsup protein to adsorb cell‐free DNA, with an accumulation capacity of 70 ± 19 mg m−2. The resulting track membrane‐based biomaterial might be used in various devices for filtration and separation of cell‐free DNA molecules from biological solutions and environmental samples, and also for their accumulation, storage, and further manipulation.