Background: Ser/Thr protein kinases (STPKs) form multilayered signaling networks that mediate cellular responses in eukaryotes and prokaryotes. Results: A preliminary interaction network for the STPKs in Mycobacterium tuberculosis is described. Conclusion: STPKs that cross-phosphorylate are often co-localized, suggesting multiple activation mechanisms. Significance: The initial map of this prokaryotic STPK network provides a framework for defining the logic of M. tuberculosis signaling pathways.