We describe a case of diffuse rectal involvement with cap polyposis, manifesting as a protein-losing colopathy and occurring in the setting of advanced mechanical pelvic floor dysfunction. A 59-year-old male with a 5-year history of persistent excessive flatulence, defecatory difficulties and diarrhoea was diagnosed with extensive cap polyposis of the entire rectum. His symptoms progressed to severe faecal incontinence with mucus leakage, pelvic pain, weight loss, and hypoalbuminemia. Clinical examination exhibited severe perineal descent, a large rectocoele, poor anal squeeze, and a poor defecatory technique. After a trial of non-operative therapies addressing his defecatory dysfunction and Helicobacter Pylori eradication, surgical resection was offered due to severe symptoms with ongoing incontinence and protein loss with no other reasonable option. A robotic perineal resection with a permanent colostomy was performed, followed by an uncomplicated recovery. Our observation of coexisting mechanical pelvic floor dysfunction floor changes in this patient lends weight to the concept of prolapse-related floor changes in the pathophysiology of this rare condition.