Protein CoAlation (S‐thiolation by coenzyme A) has recently emerged as an alternative redox‐regulated post‐translational modification by which protein thiols are covalently modified with coenzyme A (CoA). However, little is known about the role and mechanism of this post‐translational modification. In the present study, we investigated CoAlation of glyceraldehyde‐3‐phosphate dehydrogenase (
GAPDH
) from a facultative anaerobic Gram‐negative bacterium
Citrobacter
sp. S‐77 (
Cb
GAPDH
).
GAPDH
is a key glycolytic enzyme whose activity relies on the thiol‐based redox‐regulated post‐translational modifications of active‐site cysteine.
LC
‐
MS
/
MS
analysis revealed that CoAlation of
Cb
GAPDH
occurred
in vivo
under sodium hypochlorite (Na
OC
l) stress. The purified
Cb
GAPDH
was highly sensitive to overoxidation by H
2
O
2
and Na
OC
l, which resulted in irreversible enzyme inactivation. By contrast, treatment with coenzyme A disulphide (Co
ASSC
oA) or H
2
O
2
/Na
OC
l in the presence of CoA led to CoAlation and inactivation of the enzyme; activity could be recovered after incubation with dithiothreitol, glutathione and CoA. CoAlation of the enzyme
in vitro
was confirmed by mass spectrometry. The presence of a substrate, glyceraldehyde‐3‐phosphate, fully protected
Cb
GAPDH
from inactivation by CoAlation, suggesting that the inactivation is due to the formation of mixed disulphides between CoA and the active‐site cysteine Cys149. A molecular docking study also supported the formation of mixed disulphide without steric constraints. These observations suggest that CoAlation is an alternative mechanism to protect the redox‐sensitive thiol (Cys149) of
Cb
GAPDH
against irreversible oxidation, thereby regulating enzyme activity under oxidative stress.