Synaptophysin is an abundant synaptic vesicle protein without a definite synaptic function. Here, we examined a role for synaptophysin in synapse formation in mixed genotype micro-island cultures of wild-type and synaptophysin-mutant hippocampal neurons. We show that synaptophysin-mutant synapses are poor donors of presynaptic terminals in the presence of competing wild-type inputs. In homogenotypic cultures, however, mutant neurons display no apparent deficits in synapse formation compared with wild-type neurons. The reduced extent of synaptophysin-mutant synapse formation relative to wild-type synapses in mixed genotype cultures is attenuated by blockers of synaptic transmission. Our findings indicate that synaptophysin plays a previously unsuspected role in regulating activity-dependent synapse formation.culture Í activity Í synaptic competition T he mechanism underlying the formation of functional synaptic circuits is one of the central problems of neurobiology that remains to be resolved. In the prevailing view, growing axons are guided to their targets and undergo synaptogenesis by predominantly activity-independent processes. Subsequently, the initial rough connections are refined by activity-dependent synapse remodeling, in which active synapses are preferentially stabilized at the expense of less active synapses to generate an optimal synaptic circuit supporting nervous system function (1-3). The molecular mechanisms of synaptogenesis and synapse remodeling are best understood at the neuromuscular junction, where some of the key molecular players have been identified (4). In central neurons, however, the mechanisms that drive the formation of functional synaptic circuits remain largely unknown.Synaptophysin I (syp) is a synaptic vesicle membrane protein that is ubiquitously expressed throughout the brain (5, 6). Despite its abundance, analysis of syp interactions with other synaptic vesicle proteins and presynaptic molecules has not revealed a clear function. A possible role for syp in regulating synaptic vesicle cycling has been suggested by the findings that antibodies to syp reduce neurotransmitter release in Xenopus neuromuscular synapses (7), and that peptides which interfere with syp binding to dynamin, a component of endocytic machinery, block endocytosis at squid giant synapse (8). Mice carrying a targeted deletion of the syp gene, however, do not display any obvious phenotype to support these proposals (9). The anatomical structure and protein composition of the brain seem normal, and the properties of baseline synaptic transmission and shortand long-term synaptic plasticity also are unchanged compared with wild-type mice. These results have suggested that syp function is either redundant or compensated for by other proteins (9). It also is possible that syp plays a subtle, nonessential regulatory role in some aspect of synapse function that is not apparent when comparing the differences between wild-type and mutant animals.Here, we investigate a role of syp in synapse formation in the presence...