Myeloperoxidase is proposed to play a central role in bacterial killing by generating hypochlorous acid within neutrophil phagosomes. However, it has yet to be demonstrated that these inflammatory cells target hypochlorous acid against bacteria inside phagosomes. In this investigation, we treated Staphylococcus aureus with varying concentrations of reagent hypochlorous acid and found that even at sublethal doses, it converted some tyrosine residues in their proteins to 3-chlorotyrosine and 3,5-dichlorotyrosine. To determine whether or not ingested bacteria were exposed to hypochlorous acid in neutrophil phagosomes, we labeled their proteins with [ 13 C 6 ]tyrosine and used gas chromatography with mass spectrometry to identify the corresponding chlorinated isotopes after the bacteria had been phagocytosed. Chlorinated tyrosines were detected in bacterial proteins 5 min after phagocytosis and reached levels of approximately 2.5/1000 mol of tyrosine at 60 min. Inhibitor studies revealed that chlorination was dependent on myeloperoxidase. Chlorinated neutrophil proteins were also detected and accounted for 94% of total chlorinated tyrosine residues formed during phagocytosis. We conclude that hypochlorous acid is a major intracellular product of the respiratory burst. Although some reacts with the bacteria, most reacts with neutrophil components.Since Metchnikoff (1) first observed phagocytosis of bacteria in white blood cells, numerous investigations have been undertaken to determine the mechanisms responsible for bacterial killing. It is now well established that neutrophils use oxidative and non-oxidative mechanisms to kill bacteria (2, 3). However, our understanding of the precise ways in which these host defenses work is still in its infancy. This is especially true for how neutrophils use oxygen to fight infection. When they phagocytose bacteria, neutrophils rapidly consume oxygen, which is reduced to superoxide by an NADPH oxidase. Superoxide is not toxic to bacteria but spawns numerous other reactive oxygen species that have been implicated in bacterial killing (4). Chief among these is hypochlorous acid, which is formed from hydrogen peroxide and chloride in a reaction catalyzed by myeloperoxidase (5).Results from several studies indicate that myeloperoxidase is required for the majority of oxygen-dependent killing of certain bacteria such as Staphylococcus aureus (4, 6, 7). It is released into phagosomes along with superoxide and hydrogen peroxide (8). However, myeloperoxidase is a complex enzyme with several different activities (5), and it can not be assumed that its predominant function within neutrophil phagosomes is to produce hypochlorous acid. Early studies showing incorporation of chlorine-36 (9) and iodination of bacterial and neutrophil proteins (10) indicated that hypohalous acids are produced when neutrophils undergo phagocytosis. More recently, it was demonstrated that free tyrosine enclosed inside red blood cell ghosts was chlorinated when these vesicles were phagocytosed by neutrophils (11)....