Neurodegenerative diseases, such as Alzheimers diseases (AD), are becoming more prevalent as the population ages. However, the mechanisms that lead to synapse destabilization and neuron death remain elusive. The advent of proteomics has allowed for high-throughput screening methods to search for biomarkers that could lead to early diagnosis and treatment and to identify alterations in the cellular proteome that could provide insight into disease etiology and possible treatment avenues. In this review, we have concentrated mainly on the findings that are related to how and whether proteomics studies have contributed to two aspects of AD research, the development of biomarkers for clinical diagnostics, and the recognition of proteins that can help elucidate the pathways leading to AD brain pathology. Neurodegenerative diseases are becoming more prevalent as the population ages, yet the mechanisms that lead to synapse destabilization and neuronal death remain elusive. The advent of proteomics has led to methods for highthroughput screening to search for biomarkers that can be used for the early diagnosis and treatment of various diseases and to identify alterations in the cellular proteome that can provide insight into disease etiology and potential avenues for treatment. How and why only specific classes of neurons are affected when a genetic mutation is identified in a ubiquitously expressed gene are major questions that underlie the study of neurodegeneration. Clear examples of this phenomenon are the mutations in amyloid precursor protein (APP) or presenilin 1 (PSEN1) and 2 (PSEN2) that occur in Alzheimer's disease (AD) 1 , which affect learning and memory circuits (1, 2); super oxide dismutase 1 (SOD1) mutations that specifically affect motor neurons (MNs) in amyotrophic lateral sclerosis (3); huntingtin mutations that affect cortico-striatal circuits in cases of Huntington's disease (4, 5) and Parkin and Pink1 mutations associated with autosomal recessive familial early-onset Parkinson disease targeting dopamine generating cells in the substantia nigra (6, 7).All the neurodegenerative diseases mentioned above are characterized by neuronal dysfunction and neuronal death. However, they are distinct in terms of their genetics, pathologies, phenotypes, and treatments. Proteomics studies have been performed to analyze differentially expressed proteins in different disease paradigms, however, the diversity of models and samples that have been included in these studies are too numerous to cover in a review. We have therefore focused mainly on studies performed in AD because it is the most prevalent neurodegenerative disorder (8) and a larger number of studies have been performed using similar biological samples. Thus, in this review, we have concentrated mainly on findings related to how and whether proteomics studies have contributed to the identification of biomarkers or to our understanding of brain pathology in AD.AD is a multifactorial and complex neurodegenerative disorder that is characterized by progressive ...