2020
DOI: 10.1021/acs.jpca.0c01729
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Proton Transfer vs Complex Formation Channels in Ionized Formic Acid Dimer: A Direct Ab Initio Molecular Dynamics Study

Abstract: Photoirradiation to a hydrogen-bonded system plays an important role in the initial DNA and enzyme damage processes. The formic acid (FA) dimer is a model compound of double proton transfer systems, such as DNA base pairs. In the present study, the reactions of the FA dimer cation, formed upon ionization of the neutral dimer, have been investigated by the direct ab initio molecular dynamics method. Two reaction channels were identified for the FA dimer cation: complex formation and proton transfer (PT). In the… Show more

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Cited by 16 publications
(21 citation statements)
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References 25 publications
(43 reference statements)
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“…The total energy drift in all trajectory calculations was less than 0.01 kcal/mol. Direct AIMD calculations were carried out using our own code. Similar calculations were carried out for O­( 3 P)­(H 2 O) n and O­( 1 D)­(H 2 O) n .…”
Section: Computational Detailsmentioning
confidence: 99%
“…The total energy drift in all trajectory calculations was less than 0.01 kcal/mol. Direct AIMD calculations were carried out using our own code. Similar calculations were carried out for O­( 3 P)­(H 2 O) n and O­( 1 D)­(H 2 O) n .…”
Section: Computational Detailsmentioning
confidence: 99%
“…Direct AIMD calculations of the neutral NF 3 –CH 3 Cl cluster were carried out at a constant temperature (10 K) to generate the initial geometries of the structure in the vertical electron capture state, [(NF 3 –CH 3 Cl) − ] ver . 46 The Nosé–Hoover algorithm was used to maintain a constant temperature in each trajectory. 47,48 The direct AIMD calculations of [(NF 3 –CH 3 Cl) − ] ver were performed on selected geometries at the CAM-B3LYP/6-311++G(d,p) level of theory.…”
Section: Methodsmentioning
confidence: 99%
“…The total energy drifts in all trajectory calculations were less than 0.01 kcal/mol. The direct AIMD calculations were carried out using our own code. ,, …”
Section: Computational Detailsmentioning
confidence: 99%
“…In the present study, reactions of [PhOH–(NH 3 ) n ] + ( n = 1–5), following ionization of neutral clusters, were investigated using a direct AIMD method. , We focus mainly on the reaction rate of a PT after ionization and its reaction mechanism. Scheme shows an illustration of the potential energy curves for the photoreaction of PhOH–(NH 3 ) n derived from previous studies.…”
Section: Introductionmentioning
confidence: 99%