Linking marine sinks to potential terrestrial sources is one of most intriguing but challenging aspects of sediment source-to-sink studies. In this study, we analyzed 23 zircon samples (3271 filtered best ages) from surface sediments of the east China seas (ECSs) that cover a large portion of the Bohai Sea, Yellow Sea, East China Sea to part of the northeastern South China Sea. The results of U-Pb age distributions exhibit variable signatures in different seas. The Bohai Sea is characterized by 4 age populations at 203–286 Ma, 383–481 Ma, 1830–1940 Ma and 2480–2548 Ma, whereas the southern Yellow Sea and the East China Sea are featured by 5 age populations at 176–223 Ma, 383–481 Ma, 732–830 Ma, 1830–1940 Ma and 2480–2548 Ma. We propose that the presence or absence of the population of 732–830 Ma in the Yangtze Craton (YC) and the North China Craton (NCC) is a possible geochronological signature to distinguish zircon grains derived from the two source regions. Furthermore, on the basis of multidimensional scaling (MDS), U-Pb ages in the sediments of the Bohai Sea, East China Sea and the Taiwan Strait could be correspondently linked to those of the Yellow River, the Yangtze River and Taiwan rivers. The good linkages support the view that U-Pb age distributions of detrital zircons in the margin seas are mainly controlled by fluvial discharges, and ultimately, by the tectonic history of the corresponding source regions. Using a sediment forward mixing model, we obtained the relative sediment contributions and spatial variations of five most important river discharges in the region. The mixing results suggest that the major rivers in the region, i.e., the Yangtze and the Yellow Rivers, are the dominant sediment contributors to the continental margin, and their mixing coefficients could be used to infer relative sediment budgeting. In addition, spatial variations in mixing coefficient in the East China Sea indicate that sediment mixing and partitioning processes in the marine depositional environment have played a part role in propagating the provenance signals as a result of interaction of oceanic currents and tides. The combined method between provenance analysis and mixing modeling provides a feasible way to appreciate sediment budgeting in the geological past.