Nanoscale films of redox-active amine polymers such as polypyrrole (Ppy) are of interest for aqueous energy storage, water treatment, and chemical sensors. Unfortunately, the electrochemical properties of Ppy are constrained by the local material structures that form during typical synthesis. In this study, we examine how crosslinking Ppy postsynthesis with short-chain bifunctional alkyl-halide crosslinkers influences the charge storage properties of Ppy. Specifically, we employ dibromoethane (EtBr 2 ), dibromopropane (PrBr 2 ), and dibromobutane (BuBr 2 ) crosslinkers to link amines from adjacent Ppy polymer chains in nanoscale Ppy films formed by electrodeposition. We study the electrochemical performance of the resulting structures using an electrochemical quartz crystal microbalance complemented by density-functional theory studies. We identify that the shortest (ethyl) crosslinker sterically traps free anions from the electrolyte within the Ppy structure. These trapped anions lead to a qualitative shift in the electrochemical mechanism from anion-insertion to cation-insertion behavior. We identify that the propyl crosslinker, with just one carbon more than ethyl, allows for more rapid anion motion than intrinsic Ppy, accessing electrochemical capacities up to 60% higher than that with no crosslinker. These results reveal the strong impact of the local molecular structure on the electrochemical properties of redox-active polymers and demonstrate the use of short-chain bifunctional crosslinkers to control their qualitative electrochemical response.