Previous work has established that humans have an attentional bias towards emotional signals, and there is some evidence that this phenomenon is shared with bonobos, our closest relatives. Although many emotional signals are explicit and overt, implicit cues such as pupil size also contain emotional information for observers. Pupil size can impact social judgment and foster trust and social support, and is automatically mimicked, suggesting a communicative role. While an attentional bias towards more obvious emotional expressions has been shown, it is unclear whether this also extends to a more subtle implicit cue, like changes in pupil size. Therefore, the current study investigated whether attention is biased towards pupils of differing sizes in humans and bonobos. A total of 150 human participants (141 female), with a mean age of 19.13 (ranging from 18 to 32 years old), completed an online dot-probe task. Four female bonobos (6 to 17 years old) completed the dot-probe task presented via a touch screen. We used linear mixed multilevel models to examine the effect of pupil size on reaction times. In humans, our analysis showed a small but significant attentional bias towards dilated pupils compared to intermediate-sized pupils and intermediate-sized pupils when compared to small pupils. Our analysis did not show a significant effect in bonobos. These results suggest that the attentional bias towards emotions in humans can be extended to a subtle unconsciously produced signal, namely changes in pupil size. Due to methodological differences between the two experiments, more research is needed before drawing a conclusion regarding bonobos.