A unique extracellular and thermostable cyclomaltodextrin glucanotransferase (CGTase) from the hyperthermophilic archaeon Thermococcus sp. strain B1001 produces predominantly (>85%) ␣-cyclomaltodextrin (␣-CD) from starch (Y. Tachibana, et al., Appl. Environ. Microbiol. 65:1991Microbiol. 65: -1997Microbiol. 65: , 1999). Nucleotide sequencing of the CGTase gene (cgtA) and its flanking region was performed, and a cluster of five genes was found, including a gene homolog encoding a cyclomaltodextrinase (CDase) involved in the degradation of CDs (cgtB), the gene encoding CGTase (cgtA), a gene homolog for a CD-binding protein (CBP) (cgtC), and a putative CBP-dependent ABC transporter involved in uptake of CDs (cgtDE). The CDase was expressed in Escherichia coli and purified. The optimum pH and temperature for CD hydrolysis were 5.5 and 95°C, respectively. The molecular weight of the recombinant enzyme was estimated to be 79,000. The CDase hydrolyzed -CD most efficiently among other CDs. Maltose and pullulan were not utilized as substrates. Linear maltodextrins with a small glucose unit were very slowly hydrolyzed, and starch was hydrolyzed more slowly. Analysis by thin-layer chromatography revealed that glucose and maltose were produced as end products. The purified recombinant CBP bound to maltose as well as to ␣-CD. However, the CBP exhibited higher thermostability in the presence of ␣-CD. These results suggested that strain B1001 possesses a unique metabolic pathway that includes extracellular synthesis, transmembrane uptake, and intracellular degradation of CDs in starch utilization. Potential advantages of this starch metabolic pathway via CDs are discussed.Cyclomaltodextrins (CDs) are cyclic oligosaccharides consisting of ␣-1,4-linked 6-, 7-, or 8-glucopyranose units, usually referred to as ␣-, -, or ␥-CDs, respectively. CDs possess a unique torus shape and the polar hydroxyl groups are oriented toward the outside, keeping the interior cavity relatively hydrophobic. Therefore, CDs are soluble in water and the hydrophobic environment of the cavity enables them to form inclusion complexes with many organic and inorganic molecules, thereby changing the physical and chemical properties of the included compounds. This is the basis of broad applications in the food, cosmetic, and pharmaceutical industries (2, 28).CDs are formed enzymatically from starch by the action of cyclomaltodextrin glucanotransferase ( In K. oxytoca M5a1, the novel starch degradation pathway via CD, including the extracellular conversion of starch into CDs by CGTase and uptake of the CDs by a specific system followed by intracellular linearization by a CDase, was proposed. In addition, the genes responsible for starch metabolism were clustered on the chromosome. Until now, no other organisms possessing both CGTase and CDase for the synthesis and degradation of CDs have been found.Recently, we have isolated a hyperthermophile, Thermococcus sp. strain B1001, which produces a unique CGTase that can catalyze predominantly the formation of ␣-CD (Ͼ8...