White spot syndrome virus (WSSV) is at present one of the major pathogens in shrimp culture worldwide. The complete genome of this virus has been sequenced recently. To identify the structural and functional proteins of WSSV, the purified virions were separated by SDS-PAGE. Twenty-four protein bands were excised, in-gel digested with trypsin, and subjected to matrix-assisted laser desorption ionization-time of flight mass spectrometry and electrospray ionization tandem mass spectrometry, respectively. White spot syndrome virus (WSSV), 1 considered to be a new virus (1), is one of the major pathogens in cultured penaeid shrimp. First appearing in the 1990s in Taiwan, WSSV has spread rapidly to shrimp-farming areas around the world causing large economic losses. The virus has a broad host range, including other invertebrate aquatic organisms, such as crab and crayfish (2, 3). The WSSV particles are nonoccluded and bacilliform in shape with double envelopes (4). In 1997, the WSSV genomic DNA was purified successfully from Penaeus japonicus shrimp in China (5), and the genomic DNA and cDNA libraries were constructed. WSSV genome contains a 305-kb double-stranded circular DNA (6), which is longer than the 293-kb genome isolated from Penaeus monodon shrimps in Thailand (7). Approximately 180 open reading frames (ORFs) of 50 amino acids or more were revealed by the analysis of the WSSV genomic DNA sequences (6). However, in contrast to the insect baculovirus, one of the best studied viruses, only a few genes from WSSV have been reported (8).With the completion of the WSSV genomic DNA sequence, research has now focused on the functional analysis of the gene products. Essential to the functional analysis is to identify the proteins expressed in WSSV. To this end, a proteomic approach using mass spectrometry has been proven to be the most effective technology for the identification of proteins (9). Recently, matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry (MS) and electrospray ionization tandem mass spectrometry (ESI-MS/MS) utilizing a quadrupole time-of-flight (Q-TOF) mass spectrometer have been used as tools for the characterization of proteins because of their high sensitivity and throughput (10).In this communication, the WSSV proteins separated by SDS-PAGE were analyzed using MALDI-TOF MS and ESI-MS/MS (Q-TOF), respectively. The resulting mass spectrometric data were searched against the theoretical ORF database of WSSV. One of the newly retrieved genes, vp466 gene, was further characterized.
EXPERIMENTAL PROCEDURES
Proliferation and Purification of Shrimp WSSVProliferation and Purification of WSSV Virion-The infected tissues from penaeid shrimp P. monodon (e.g. gill, stomach, midgut, etc.) From the ‡Department