Summary
Bacteroidales are the most abundant Gram negative bacteria of the human
intestinal microbiota comprising more than half of the bacteria in many individuals. Some
of the factors that these bacteria use to establish and maintain themselves in this
ecosystem are beginning to be identified. However, ecological competition, especially
interference competition where one organism directly harms another, is largely unexplored.
To begin to understand the relevance of this ecological principle as it applies to these
abundant gut bacteria and factors that may promote such competition, we screened
Bacteroides fragilis for the production of antimicrobial molecules. We
found that the production of extracellularly secreted antimicrobial molecules is
widespread in this species. The first identified molecule, described in this manuscript,
contains a membrane attack complex/perforin (MACPF) domain present in host immune
molecules that kill bacteria and virally infected cells by pore formation, and mutations
affecting key residues of this domain abrogated its activity. This antimicrobial molecule,
termed BSAP-1, is secreted from the cell in outer membrane vesicles and no additional
proteins are required for its secretion, processing or immunity of the producing cell.
This study provides the first insight into secreted molecules that promote competitive
interference among Bacteroidales strains of the human gut.