“…Interestingly, there was an overlap of only eight transcripts (ABI3, BCL11B, CD5, CR1, EST1, PVRIG, SLC25A38, and TRBC1) between the AUC comparisons at T2 and T3 (Fig 4D). The downregulation of CD5, BCL11B, and PVRIG transcripts in the low AUC group of both T2 and T3 suggest a decreased T cell activation, TCR signaling, and an increased T cell exhaustion (Fig 4E) (23,24,25,26). When the transcripts are classified by biotype, we discover that most of the transcripts are protein coding (79% DTE at T2 and 68% DTE at T3) (Fig 4F).…”