Several derivatives of 6 amino 4 aryl 2 thioxo 1,2,3,4 tetrahydropyrimidine 5 carbonitriles were synthesized via Biginelli type reaction and tested for their anti proliferative activity on human breast cancer (MCF 7) and human colon carcinoma (HT29) cell lines. Malignant and non malignant cells were cultivated in RPMI medium and incubated with different concentrations of these pyrimidines. Cell viability was evaluated by MTT assay. Apoptotic cells were determined using DAPI (4' 6 diamidino 2 phenylindole) and propidium iodide staining of DNA fragmentation by flow cytometry (sub G1 peak). 6 Amino 4 (4 chlorophenyl) 2 thioxo 1,2,3,4 tetrahydropyrimidine 5 carbonitrile and 6 amino 4 [4 dimethy lamino)phenyl] 2 thioxo 1,2,3,4 tetrahydropyrimidine 5 carbonitrile decreased the viability of MCF 7 and HT29 cells, in contrast to L929 cells. These compounds induced a sub G1 peak inflow cytometry histo grams of treated cells indicating that apoptosis is involved in their toxicity.