The gene pcp, encoding pyrrolidone carboxyl peptidase (Pcp), from Pseudomonasfluorescens MFO was cloned and its nucleotide sequence was determined. This sequence contains a unique open reading frame (pcp) coding for a polypeptide of 213 amino acids (Mr 22,441) which has significant homology to the Pcps from Streptococcus pyogenes, Bacillus subtilis, and Bacilus amyloliquefaciens. Comparison of the four Pcp sequences revealed two highly conserved motifs which may be involved in the active site of these enzymes. The cloned Pcp from P. fluorescens was purified to homogeneity and appears to exist as a dimer. This enzyme displays a Michaelis constant of 0.21 mM with L-pyroglutamyl-,1-naphthylamide as the substrate and an absolute substrate specificity towards N-terminal pyroglutamyl residues. Studies of inhibition by chemical compounds revealed that the cysteine and histidine residues are essential for enzyme activity. From their conservation in the four enzyme sequences, the Cys-144 and His-166 amino acids are proposed to form a part of the active site of these enzymes.Pyrrolidone carboxyl peptidases (Pcps) (EC 3.4.11.8) are aminopeptidases that selectively remove amino-terminal Lpyroglutamic acid (Pyr) from peptides and proteins (15). These enzymes are present in many bacteria (30) and also in plant, animal, and human tissues (40).Preliminary studies of Pcps have consisted of purification of these enzymes from different bacterial strains (1,24,39,41,43) with a view to using them in protein sequencing to unblock proteins and polypeptides with an N-terminal pyroglutamyl residue prior to sequential Edman degradation (16). These bacterial Pcps, which are cysteine peptidases, showed an absolute specificity for pyroglutamyl residues located at the N terminus of peptides (41, 43) and for chromogenic substrates, such as L-pyroglutamyl-,B-naphthylamide (Pyr-3NA) (41), pyroglutamyl-p-nitroanilide, and pyroglutamyl-4-methylcoumarinylamide (17).Mammalian Pcps were later analyzed and shown to be involved in hormonal and neuronal metabolism (6,8,44). Two different types of Pcps have been detected in mammals. The first, which is a metallopeptidase, is specific for the pyroglutamyl-neuropeptide thyrotropin-releasing hormone (Pyr-HisPro-NH2) and is responsible for regulating the concentration of this neuropeptide (13,31,32). The second is a cysteine peptidase with a general specificity for N-terminal pyroglutamyl residues (7, 10). This Pcp, the function of which has not yet been determined, seems to be more closely related to bacterial Pcps than the first with respect to size, substrate specificity, and sensitivity to inhibitors.Recently, the structural genes encoding Pcps from the gram-positive bacteria Streptococcus pyogenes (12), Bacillus subtilis (3), and Bacillus amyloliquefaciens (45) have been cloned and characterized. The three deduced amino acid sequences are strongly homologous and display long conserved domains. The absence of homology with other peptidases suggests that these Pcps belong to a new class of peptidases * ...