OmpK35 and OmpK36 are the major outer membrane porins of Klebsiella pneumoniae. In this study, a virulent clinical isolate was selected to study the role of these two porins in antimicrobial resistance and virulence. The single deletion of ompK36 (⌬ompK36) resulted in MIC shifts of cefazolin, cephalothin, and cefoxitin from susceptible to resistant, while the single deletion of ompK35 (⌬ompK35) had no significant effect. A double deletion of ompK35 and ompK36 (⌬ompK35/36) further increased these MICs to high-level resistance and led to 8-and 16-fold increases in the MICs of meropenem and cefepime, respectively. In contrast to the routine testing medium, which is of high osmolarity, susceptibility tests using low-osmolarity medium showed that the ⌬ompK35 mutation resulted in a significant (>4-fold) increase in the MICs of cefazolin and ceftazidime, whereas a ⌬ompK36 deletion conferred a significantly (4-fold) lower increase in the MIC of cefazolin. In the virulence assays, a significant (P < 0.05) defect in the growth rate was found only in the ⌬ompK35/36 mutant, indicating the effect on metabolic fitness. A significant (P < 0.05) increase in susceptibility to neutrophil phagocytosis was observed in both ⌬ompK36 and ⌬ompK35/36 mutants. In a mouse peritonitis model, the ⌬ompK35 mutant showed no change in virulence, and the ⌬ompK36 mutant exhibited significantly (P < 0.01) lower virulence, whereas the ⌬ompK35/36 mutant presented the highest 50% lethal dose of these strains. In conclusion, porin deficiency in K. pneumoniae could increase antimicrobial resistance but decrease virulence at the same time.