Homeoproteins are a class of transcription factors defined by the structure of their DNA-binding domain, the homeodomain. In addition to their nuclear cell-autonomous activities, homeoproteins transfer between cells, thanks to two separate steps of secretion and internalization, which both rely on unconventional mechanisms. Internalization is driven by the third helix of the homeodomain (Penetratin) through a non-vesicular and endocytosis-independent mechanism. In contrast, homeoprotein secretion involves vesicular compartments and requires the presence of a sequence of 11 amino acids (Sec sequence) spanning between the second and third helix of the homeodomain. In this study, we report that the SecPen polypeptide, which combines the two identified domains, Penetratin and Sec, bears all of the necessary information to go in and out of cells. We have analyzed key mechanisms and demonstrated that this peptide can efficiently cross a tight junction epithelium.Homeoproteins belong to a class of transcription factors with key developmental and adult functions. In addition to their nuclear cell-autonomous activities, they also have the ability to transfer between cells (1). The latter property likely serves specific paracrine functions. For example, the extracellular application of a gradient of Engrailed homeoprotein attracts or repulses the nasal or temporal growth cones of retinal ganglion cells, respectively, suggesting a non-cell autonomous function of Engrailed in axonal guidance (2). Homeoprotein intercellular transfer involves two separate steps of secretion and internalization. The homeodomain (the DNA-binding domain that defines homeoproteins) is necessary and sufficient for transfer (3), even though other parts of the protein are endowed with transfer regulatory functions (4). The two sequences required for secretion and internalization are highly conserved, and indeed, intercellular transfer is a shared property of several homeoproteins. Mutational analysis indicates that internalization and secretion rely on two distinct mechanisms (5). Internalization is driven by the third helix of the homeodomain (6). This 16-amino-acid-long peptide (thereafter Penetratin or Pen) 2 is internalized by live cells through a mechanism independent of endocytosis (7) and has been used extensively to address exogenous compounds into the cell cytoplasm and nucleus (see Ref. 8 for review). Homeoproteins are also secreted despite the absence of classical secretion signals. Using Engrailed-1 (En1) and Engrailed-2 (En2) as prototypic homeoproteins, it was shown that they are present in vivo in vesicles enriched in cholesterol and glycosphingolipids (9). The addressing of Engrailed proteins to this compartment and their secretion are abolished upon deletion of 11 amino acids spanning between the second and third helix of the homeodomain (5, 10), which was called the Sec sequence (see Fig. 3A). It thus suggests that this sequence participates in unconventional homeoprotein secretion (in the absence of secretion signal sequence).In t...