Follicular lymphoma is characterized by the presence of the t(14;18)(q32;q21) chromosomal translocation that juxtaposes the bcl-2 gene at 18q21 with the immunoglobulin heavy chain (IgH) locus at 14q32. We have previously shown that accurate quantitation of t(14;18)-carrying cells in follicular lymphoma patients can be achieved by non-gelbased real-time TaqMan polymerase chain reaction (PCR; Applied Biosystems, Foster City, CA). Since our report, several studies have demonstrated that real-time PCR is highly sensitive and a reliable tool for evaluating treatment effectiveness and for following minimal residual disease in follicular lymphoma patients. Unfortunately, currently available real-time PCR methods do not determine the size of the amplification product, which is useful for excluding contamination and is commonly used as presumptive evidence of clonal identity or disparity when multiple samples from the same patient are analyzed. We describe a modified real-time PCR assay that rapidly allows accurate quantitation and precise determination of the size of the t(14;18) fusion sequence without the need for gel electrophoresis. In this assay, a consensus immunoglobulin heavy chain-joining region gene (JH) primer labeled at its 5' end with the fluorescent dye NED (Applied Biosystems) is included in the real-time PCR assay and thus is incorporated into the bcl-2/JH fusion product. The JH-NED primer did not interfere with the TaqMan probe fluorescent signal or target detection and allowed subsequent amplicon size determination by semiautomated highresolution capillary electrophoresis.KEY WORDS: Follicular lymphoma, High-resolution capillary electrophoresis, Real-time polymerase chain reaction, t(14;18).
Mod Pathol 2002;15(4):448 -453Real-time polymerase chain reaction (PCR) for detection and quantitation of bcl-2/JH fusion sequences characteristic of t(14;18) (q32;q21) is being used increasingly to monitor tumor burden and the effect of therapy in patients with follicular lymphoma (FL; 1-5). Real-time PCR methods enable t(14;18) detection without the need to open amplification tubes and are target specific, highly sensitive, and reproducible. Thus, real-time PCR methods have several advantages over conventional PCR techniques that require gel electrophoresis-based amplicon detection and quantitation techniques. Currently available real-time PCR methods to detect the t(14;18) do not allow amplicon size determination. This is a major drawback for a few reasons. First, one cannot easily exclude contamination. Second, size of PCR products from multiple samples (either simultaneous or sequential) is a valuable means of determining clonal relatedness, as the size of bcl-2/JH fusion sequences generally vary from clone to clone (6 -8). Undoubtedly, sequencing of the fusion sequences is the most accepted method for determining clonal relatedness, but sequencing methods can be tedious and time consuming. Third, as t(14;18)-positive cells are detected in normal healthy individuals (9 -12), the ability to quantitate low-level...