A simple, reproducible, and rapid gas chromato graphic method for short-chain fatty acid determina tion in human feces was developed. It involves direct injection of fecal supernatants into the gas chromato graph, without any pretreatment. Contamination of the gas chromatographic column with nonvolatile fe cal material was prevented by the use of a glass liner in the injector. This liner, which acted as a precolumn, was stoppered with a glass wool plug at the lower end of the liner. Injection was performed against the glass wall of the liner, ensuring an immediate contact of the injected sample with the hot glass wall. More than 100 injections of fecal supernatants could be carried out before the liner had to be replaced by a new one. Peak tailing and ghosting was prevented by the use of for mic acid in the fecal samples. The method gave sharp peaks with baseline separation for all the fatty acids.© 1996 Academic Press, Inc.Short-chain fatty acids (SCFA)2 are produced largely as a result of the breakdown of dietary carbohydrate in the gut by anaerobic bacterial fermentation (1). Acetic, propionic, and ¿7-butyric acid are quantitatively the most important ones. The SCFA present in minor amounts in the human colon (i-butyric, ^-valeric, i-valeric, and i3-caproic acid (2)) primarily originate from protein catabolism and in particular from degradation of certain amino acids (3).About 80-90% of the SCFA are absorbed; the rest are excreted in the feces (4, 5). Despite their presence in the colon in high millimolar concentrations, little information exists regarding the role of SCFA in health and disease (6-8). This is partly due to the fact that 1 To whom correspondence should be addressed. Fax: 0031 243540103.2 Abbreviations used; SCFA, short-chain fatty acid; GC, gas chro matography; IS, internal standard.