In an overview, digital holographic microscopy (DHM) for usage in a biomedical laboratory environment and the application of DHM-based quantitative phase imaging (QPI) for quantification of inflammation and toxicity related effects in tissue sections, cell cultures and blood cells are presented. First, the capabilities to determine inflammation as well as nanomaterial induced pathological alterations in dissected ex vivo colon and lung tissues are illustrated. Then, results from cell culture-based time-lapse growth monitoring assays and perioperative observation of living primary human leucocytes demonstrate DHM as a cytometric tool for in vitro toxicity testing and temporal disease course characterization.