We present theoretical calculations of high-order-harmonic generation (HHG) from stereoisomers of 1,2-dichloroethylene (C 2 H 2 Cl 2 ) and 2-butene (C 4 H 8 ) based on the quantitative rescattering theory. Our results show that the HHG spectra from these cis and trans isomers with intense midinfrared laser pulses are clearly distinguishable, even when the molecules are randomly oriented, in good agreement with the recent experiments by Wong et al. [Phys. Rev. A 84, 051403(R) (2011)]. We found that the angle-averaged tunneling ionization yields and photoionization cross sections from the cis and trans isomers for both molecules are nearly identical. The origin of the differences in HHG spectra is traced as due to the interplay in the angular dependence of the photoionization (or photorecombination) cross section and ionization rate. High-order-harmonic generation (HHG) has been shown both experimentally and theoretically to contain information about the target molecular structure and dynamics, which are encoded in the amplitude and phase of the emitted high-order harmonics [1][2][3][4][5][6][7][8][9][10][11][12]. HHG spectroscopy for simple molecules has been greatly benefited from the ability to align molecules [13]. In fact, rich information contained in HHG spectra from aligned molecules is mostly washed out if the molecules are not well aligned. Whereas earlier studies have focused mostly on simple molecules with the use of infrared lasers, more recent studies in HHG spectroscopy have now expanded to more complex targets and by using midinfrared lasers [14][15][16][17].As the geometric arrangement of atoms in stereoisomers differs, they can serve as interesting tests for HHG spectroscopy. In a recent paper by Wong et al. [16], HHG spectra from stereoisomers of 1,2-dichloroethylene (1,2-DCE, C 2 H 2 Cl 2 ) and 2-butene (C 4 H 8 ) have been reported. It was found that the spectra from these cis and trans isomers are quite distinguishable in a broad range of energy, even when the molecules are not aligned. The mechanism behind this was attributed as due to the differences in the strong-field ionization. The ability to distinguish nonaligned isomers by HHG spectroscopy is of great interest. In particular, it opens up the possibility to study fast structural changes during the isomerization process using HHG [18] even without the need of molecular alignment.In this Rapid Communication we employ the quantitative rescattering (QRS) theory [4,19,20] as extended to polyatomic targets [21] to calculate HHG spectra from cis and trans stereoisomers of 1,2-DCE and 2-butene under intense midinfrared laser pulses. Our calculation shows good agreements with experiment by Wong et al. [16]. However, we found that the angle-averaged ionization yields from cis and trans isomers are nearly indistinguishable. Here we provide an analysis of the nature of the differences in HHG spectra from these isomers.Within the QRS, the laser-induced dipole D(ω,θ,φ) for a molecule in a linearly polarized intense laser pulse can be written as a p...