Quantitative Trait Locus Mapping for Fusarium Wilt Race 4 Resistance in a Recombinant Inbred Line Population of Pima Cotton (Gossypium Barbadense)

Abdelraheem, Abdelraheem; Zhang, Jinfa

doi:10.3390/pathogens11101143

Cited by 11 publications

(6 citation statements)

References 27 publications

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“…Based on published QTLs for resistance to FOV (Said et al 2015; www.cottonqtldb.org; Ulloa et al 2013; Wang et al 2018; Abdelraheem et al 2017, 2020, 2021, 2022; Zhu et al 2022), representative markers within consistent FOV-resistance QTL regions across two or more tests or publications were first examined in this study. As a result, a total of 75 flanking sequences for 75 SNPs targeting chromosome D03 spanning the 0.273-49.876 Mb region based on the sequenced TM-1 genome (HAU v1.1, Wang et al 2019; www.cottongen.org) were chosen (Supplementary Table 1).…”

Section: Methodsmentioning

confidence: 99%

Targeted development of diagnostic SNP markers for resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)

Zhang

Wheeler²,

Dever³

et al. 2023

Preprint

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Fusarium wilt caused by the soil-borne fungus Fusarium oxysporum f. sp. vasinfectum (FOV) race 4 (FOV4) has become one of the most important emerging diseases in US cotton production. Numerous QTLs have been reported for resistance to FOV; however, no major FOV4-resistance QTL or gene has been identified and used in breeding Upland cotton (Gossypium hirsutum) for FOV4 resistance. In this study, a panel of 223 Chinese Upland cotton accessions was evaluated for FOV4 resistance based on seedling mortality rate (MR) and stem and root vascular discoloration (SVD and RVD). SNP markers were developed based on targeted genome sequencing using AgriPlex Genomics. The chromosome region at 2.130-2.292 Mb on D03 was significantly correlated with both SVD and RVD but not with MR. Based on the two most significant SNP markers, accessions homozygous for AA or TT SNP genotype averaged significantly lower SVD (0.88 vs. 2.54) and RVD (1.46 vs. 3.02) than those homozygous for CC or GG SNP genotype. The results suggested that a gene or genes within the region conferred resistance to vascular discoloration caused by FOV4. The Chinese Upland accessions had 37.22% homozygous AA or TT SNP genotype and 11.66% heterozygous AC or TG SNP genotype, while 32 US elite public breeding lines all had the CC or GG SNP genotype. Among 463 obsolete US Upland accessions, only 0.86% possessed the AA or TT SNP genotype. This study, for the first time, has developed diagnostic SNPs for marker-assisted selection and identified FOV4-resistant Upland germplasms with the SNPs.

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Section: Methodsmentioning

confidence: 99%

Targeted development of diagnostic SNP markers for resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)

Zhang

Wheeler²,

Dever³

et al. 2023

Preprint

Self Cite

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“…In a greenhouse setting, FOV4-resistant and susceptible cotton plants were tested. Several genetic markers associated with resistance and demonstrated the potential for marker-assisted selection to enhance FOV4 resistance were identified [25]. Zhang et al [26] conducted an in-depth investigation into QTLs for FOV resistance in Upland cotton, revealing 42 distinct genetic markers associated with various disease parameters.…”

Section: Qtl Mapping and Marker-assisted Selection For Fusarium Wiltmentioning

confidence: 99%

Recent studies on Fusarium wilt in cotton

S. Ayubov,

Y. Abdurakhmonov,

K. Makamov

et al. 2024

Fusarium - Recent Studies

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Fusarium oxysporum has been a subject of intensive research since 1882, with over 200 studies published from key cotton-growing countries such as the United States, China, Uzbekistan, India, Pakistan, Australia, and Brazil. The present study has employed a diverse array of research methodologies and technological approaches, primarily emphasizing research publications disseminated within the past decade. It places specific emphasis on two key domains: Molecular Mapping and Genome-Wide Association Studies (GWAS), elucidating the evolutionary analysis transition from Simple Sequence Repeat (SSR) to Single Nucleotide Polymorphism (SNP) chip utilization. The creation of a comprehensive molecular map that incorporates Quantitative Trait Loci (QTLs) related to Fusarium and consolidates findings from several research groups, accompanied by figures and tables, serves to facilitate a more thorough understanding of the genetic architecture underlying Fusarium-related traits. An in-depth examination of recent advances in marker-assisted selection for traits conferring resistance to Fusarium oxysporum f. sp. vasinfectum (FOV), coupled with a comprehensive evaluation of the pertinent genes, offers valuable insights into the development of resistant cultivars and the underlying genetic mechanisms. This entails doing a critical review of recent relevant literature. Furthermore, this investigation examines the obstacles and potential associated with developing technologies.

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“…Gossypium barbadense L., commonly known as Sea Island, Pima, Egyptian, long staple cotton (Montes et al., 2023), is characterized by its exceptional fiber quality, with silky, long, strong, and fine fibers (Abdelraheem et al., 2022). Cardoso et al.…”

Section: Introductionmentioning

confidence: 99%

Comparative analysis of key fiber characteristics in white Pima cotton (Gossypium barbadense L.): Native accessions from the Peruvian Amazon

Morales‐Aranibar,

Rivera,

Gonzales

et al. 2024

Agrosystems Geosci & Env

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The fiber quality of cotton (Gossypium barbadense L.) native to the Peruvian Amazon region is one of the most versatile and essential natural fibers in the Peruvian textile industry. There is little information about the fiber quality traits of cotton genotypes native to the Peruvian Amazon region. This study investigated the fiber quality traits of Peruvian Pima cotton accessions native to the Amazon region of the La Convención Province, Cusco, Peru, to determine the lines with the greatest potential for improving fiber quality in cotton genetic breeding programs. A total of 14 cotton accessions with white fiber color, being 12 accessions of G. barbadense L. (Pima cotton) and two accessions of Gossypium sp. (unknown cotton), were analyzed. The fiber properties determined using the high volume instrument method included seven characteristics. All fiber properties were classified into five quality classes. The data on fiber quality properties were subjected to distribution, correlation, and canonical variable analysis. The results of fiber quality properties showed that the two accessions of Gossypium sp. (unknown cotton) can be promising options to be used as high‐quality fiber progenies in crop genetic breeding programs or can be cultivated by regional farmers for the purpose of producing cotton with high fiber quality. Future investigations could utilize other methods of fiber quality analysis and compare the fiber quality of these cotton accessions native to the Peruvian Amazon region with other cotton species grown worldwide to improve the understanding of Pima cotton fiber quality and its applicability in different contexts of the textile industries.

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Quantitative Trait Locus Mapping for Fusarium Wilt Race 4 Resistance in a Recombinant Inbred Line Population of Pima Cotton (Gossypium Barbadense)

Cited by 11 publications

References 27 publications

Targeted development of diagnostic SNP markers for resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)

Targeted development of diagnostic SNP markers for resistance to Fusarium wilt race 4 in Upland cotton (Gossypium hirsutum)

Recent studies on Fusarium wilt in cotton

Comparative analysis of key fiber characteristics in white Pima cotton (Gossypium barbadense L.): Native accessions from the Peruvian Amazon

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