Background-Adenine phosphoribosyltransferase (APRT) deficiency is a hereditary purine metabolism disorder causing kidney stones and chronic kidney disease (CKD). The purpose of the study was to examine the disease course in patients who presented in childhood. Methods-The disease course of 21 (35%) patients in the APRT Deficiency Registry of the Rare Kidney Stone Consortium, who presented with manifestations and/or were diagnosed with APRT deficiency before age 18 years, was studied. The effect of pharmacotherapy on renal manifestations and outcomes was thoroughly assessed. Results-Fourteen children were placed on allopurinol, 100 (25-200) mg/day, at the age of 2.6 (0.6-16.5) years. Six of these patients had experienced kidney stone events and 3 patients had developed acute kidney injury (AKI) prior to allopurinol treatment. During 18.9 (1.7-31.5) years of pharmacotherapy, stones occurred in 2 patients and AKI in 3. Six adult patients started allopurinol treatment, 200 (100-300) mg/day, at age 29.8 (20.5-42.4) years. Five of these patients had experienced 28 stone episodes and AKI had occurred in 2. Stone recurrence occurred in 4 patients and AKI in 2 during 11.2 (4.2-19.6) years on allopurinol therapy. Lack of adherence and insufficient dosing contributed to stone recurrence and AKI during pharmacotherapy. At latest follow-up, estimated glomerular filtration rate (eGFR) was 114 (70-163) and 62 (10-103) mL/min/1.73 m 2 in those who initiated treatment as children and adults, respectively. All 3 patients with CKD stages 3-5 at last follow-up were adults when pharmacotherapy was initiated.