Quantum chemical studies of structures and spin Hamiltonian parameters of iron transferrin using isolated and embedded clusters models

Abstract

Density functional theory (DFT) based calculations using large cluster models are used to elucidate the ground state electronic structure of iron bound transferrin. Explicit incorporation of second coordination amino acid residues and crystallographic water molecules anchors the active site. Our calculations clearly suggest that tyrosine amino acid (Tyr188) residue is bound to iron when the structures are optimized within the continuum solvation model. However, in the gas phase optimized structure, we note that Tyr188 is unbound to Fe (by more than 3 Å). The Mössbauer isomer shift (δ) and quadrupolar splitting (E q) of iron transferrin are in line with the experimental data only when Tyr188 is bound to Fe(III). Further, the computed oxygen hyperfine coupling constant value is very large (−14.5 MHz) when bound to iron which can be verified through 17 O NMR experiments. We propose that Tyr188 is strongly bound to Fe(III) at physiological pH, which needs to be protonated (acidic pH) to weaken this bond, thus the metal release pathway can be possible only in acidic conditions.

MD simulation reveals differential binding of Cm(III) and Th(IV) with serum transferrin at acidic pH

“…Theoretical studies for sTf bound with other noniron metal ions including that of the actinides are very scarce. Several research groups have successfully attempted DFT studies for complexes of transferrin with metal ions, such as, Fe(III), V IV O 2+ , UO 8,30‐32 Recently through a combination of DFT and MD methods 33 it has been observed that in tandem with carbonate ion, Th(IV) prefers an octa‐dentate mode while Cm(III) prefers a hepta‐dentate mode of coordination in the sTf binding cleft. This coordination profile of the An ions is radically different from that of the Fe(III) ion.…”