For a given entanglement entropy of QFT, we investigate how to reconstruct its dual geometry by applying the Ryu-Takayanagi formula and the deep learning method. In the holographic setup, the radial direction of the dual geometry is identified with the energy scale of the dual QFT. Therefore, the holographic dual geometry can describe how the QFT changes along the RG flow. Intriguingly, we show that the reconstructed geometry only from the entanglement entropy data can give us more information about other physical properties like thermodynamic quantities in the IR region.