In situ hybridization was used to localize the sites of the repeated sequences of cytoplasmic-membrane-associated DNA (cmDNA) in human chromosomes. cmDNA was mainly present in the heterochromatic regions of chromosomes 9. Although cmDNA has buoyant densities in neutral and alkaline CsCl gradients similar to those of human satellite C DNA, which also is localized in the heterochromatic region of chromosomes 9, cmDNA was not homologous to satellite C DNA as determined by DNA'complementary RNA hybridization. These results are in agreement with our previous studies, which indicated that cmDNA is a unique species of human DNA.Cytoplasmic-membrane-associated DNA (cmDNA), isolated from human lymphocytes, has been shown to possess physical and chemical properties which differ from those of chromosomal and mitochrondrial DNAs (1). Reassociation kinetics of cmDNA show that this DNA is composed of two fractions with distinct reassociation rates (2). About 70% of cmDNA reassociates rapidly with a C_0t12 of 2.3 X 10-2 mol-sec/liter and the remaining 30% reassociates with a C0t1/2 of 223. The fast reassociating fraction is homologous to approximately 4% of the repetitive sequences of nuclear DNA, while the more slowly reassociating fraction hybridizes with 11% of the unique sequences of nuclear DNA (2).It has been suggested that cmDNA is synthesized in the nucleus and subsequently "transported" to associate with cytoplasmic membranes (3). If cmDNA represents a selected class of sequences in the human genome, then chromosome localization of at least the repetitive portion of cmDNA may indicate its origin. Alternatively, cmDNA may contain repetitive sequences similar to those found in all chromosomes and give an ambiguous chromosomal localization pattern. In this report, localization was accomplished by employing the complementary RNA with 20% fetal calf serum. Colcemid (0.01 ,ug/ml) was used to arrest the cells 2 hr before harvest.(b) DNA Extraction and Fractionation. cmDNA was isolated from lysed cells as described previously (2). cmDNA was sheared to an average molecular weight of 2 X 105 and allowed to reassociate to a Cot value of 5. The reassociated DNA, isolated by hydroxyapatite fractionation, is termed repetitive cmDNA (2). DNA was dialyzed against distilled H20 and then lyophilized. Complementary RNA was synthesized from DNA prepared in this manner. Satellite C DNA, isolated as described previously (6)