Mycoparasitic Trichoderma species have expanded numbers of fungal subgroup C chitinases that contain multiple carbohydrate binding modules and could thus be important for fungal cell wall degradation during the mycoparasitic attack. In this study, we analyzed the gene regulation of subgroup C chitinases in the mycoparasite Trichoderma virens. In addition to regulation by nutritional stimuli, we found complex expression patterns in different parts of the fungal colony, and also, the mode of cultivation strongly influenced subgroup C chitinase transcript levels. Thus, the regulation of these genes is governed by a combination of colonyinternal and -external signals. Our results showed completely different expression profiles of subgroup C chitinase genes in T. virens than in a previous study with T. atroviride, although both fungi are potent mycoparasites. Only a few subgroup C chitinase orthologues were found in T. atroviride and T. virens, and even those showed substantially divergent gene expression patterns. Microscopic analysis revealed morphogenetic differences between T. atroviride and T. virens, which could be connected to differential subgroup C chitinase gene expression. The biological function of fungal subgroup C chitinases therefore might not be as clear-cut as previously anticipated. They could have pleiotropic roles and might be involved in both degradation of exogenous chitinous carbon sources, including other fungal cell walls, and recycling of their own cell walls during hyphal development and colony formation.Several species of the fungal genus Trichoderma (sexual form, Hypocrea) are mycoparasites and are thus able to antagonize, parasitize, and kill other fungi. An integral part of the mycoparasitic attack is degradation of the prey's cell wall by chitinases, glucanases, and proteases (1). Genome analysis revealed that the numbers of chitinase-encoding genes are strongly expanded in mycoparasitic Trichoderma spp. in comparison to other filamentous fungi. Fungal chitinases belong to glycoside hydrolase family 18 (GH 18) and can be further subdivided into 3 different subgroups, A, B, and C (10, 11). Subgroup A chitinases in general contain no carbohydrate binding modules (CBMs), but subgroup B chitinases frequently have a CBM at the C-terminal end. All subgroup C (sgC) chitinases have multiple CBMs and have either two CBM 18 (chitin binding) domains or one CBM 18 and two CBM 50 (LysM) domains N terminal of their GH 18 module (5). CBMs enable efficient adherence of the enzyme to insoluble substrates and processive catalytic cleavage of the substrate (2). The additional chitinases in mycoparasitic Trichoderma spp. are members of subgroups B and C. While the saprotrophic species Trichoderma reesei has only 4 sgC chitinases, T. atroviride has 9 and T. virens has 15, suggesting the potential involvement of these chitinases in mycoparasitism (7). Surprisingly, only five orthologue pairs can be found in the sgC chitinases of T. atroviride and T. virens (TAC2/TVC2, TAC4/ TVC4, TAC5/TVC5, TAC6/TVC6, and T...